View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1029-Insertion-3 (Length: 516)

Name: NF1029-Insertion-3
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1029-Insertion-3
NF1029-Insertion-3
[»] chr8 (10 HSPs)
chr8 (8-516)||(15127391-15127897)
chr8 (212-516)||(14947139-14947446)
chr8 (218-481)||(5287942-5288205)
chr8 (218-483)||(5280213-5280478)
chr8 (218-490)||(5309027-5309299)
chr8 (291-483)||(5315809-5316001)
chr8 (8-89)||(5288656-5288737)
chr8 (8-89)||(14947879-14947960)
chr8 (8-89)||(5280643-5280724)
chr8 (123-163)||(5393436-5393476)
[»] chr6 (2 HSPs)
chr6 (252-466)||(31524432-31524646)
chr6 (125-163)||(9528501-9528539)
[»] chr3 (1 HSPs)
chr3 (123-159)||(22213910-22213946)


Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 516
Target Start/End: Original strand, 15127391 - 15127897
Alignment:
Q  8 tgaagcacttctaaattttactgtcatcactgcagctttgctactcatcctacttcctcaaagatatctatccccaggtaatgcataatattacttttgg 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  15127391 tgaagcacttctaaatttgactgtcatcactgcagctttgctactcattctacttcctcaaagatatctatccccaggtaatgcataat--tacttttgg 15127488  T
Q  108 cccttacggaaagactccctaaatataagcacattttcaaattattagatacatttctacttcctctaggatatttatacacacatgtacagattaatta 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15127489 cccttacggaaaaactccctaaatataagcacattttcaaattattagatacatttctacttcctctaggatatttatacacacatgtacaaattaatta 15127588  T
Q  208 cattaccaaaaactattggaaattctcctgttctgcgcaggccgtgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttgga 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15127589 cattaccaaaaactgttggaaattctcctgttctgcgcaggccgcgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttgga 15127688  T
Q  308 ctagatggttttccaacttatcaaattatatcatctctgttgaaagaatcaaacaattcattcacataccagctgagcctcctgccattgtggataataa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15127689 ctagatggttttccaacttatcaaattatatcatctctgttgaaagaatcaagcaattcattcacataccagctgagcctcctgccattgtggataataa 15127788  T
Q  408 ccggccgccatcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatccatgtcttcttttcctccttagttttcaatat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  15127789 ccggccgccatcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatctaagtcttcttttcctccttagttttcaatat 15127888  T
Q  508 tgtcgccta 516  Q
    ||| |||||    
T  15127889 tgttgccta 15127897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 212 - 516
Target Start/End: Complemental strand, 14947446 - 14947139
Alignment:
Q  212 accaaaaactattggaaattctcctgttctgcg---caggccgtgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttggac 308  Q
    ||||| |||| |||| || |||||||||||| |   |||||| ||| ||| ||||||||||||||||| |||||||||  ||||||||||||||||||||    
T  14947446 accaataactcttggcaactctcctgttctgtgttgcaggccttgttggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggac 14947347  T
Q  309 tagatggttttccaacttatcaaattatatcatctctgttgaaagaatcaaacaattcattcacataccagctgagcctcctgccattgtggataataac 408  Q
    |||||||||||| || ||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  14947346 tagatggttttcaaatttatcaaaccatattatctctgttgaaagaatcaaacaattcattaacataccagctgagcctcctgccgttgtggatcataac 14947247  T
Q  409 cggccgccatcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatccatgtcttcttttcctccttagttttcaatatt 508  Q
    || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||| |||   ||||| || ||    
T  14947246 cgacctccatcttcatggccttccaagggcaagattgatcttcaaggcttagaggtaatgttccatccttgtcttattttccacctctattttcgatgtt 14947147  T
Q  509 gtcgccta 516  Q
    ||||||||    
T  14947146 gtcgccta 14947139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 218 - 481
Target Start/End: Complemental strand, 5288205 - 5287942
Alignment:
Q  218 aactattggaaattctcctgttctgcgcaggccgtgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttggactagatggtt 317  Q
    |||| |||| || ||| ||||| || ||||||| ||||||  ||||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  5288205 aactcttggcaactcttctgttgtgtgcaggccttgtggggctgtctctttcttatgcttttactttgacaggagcccaaatattttggagtagatggtt 5288106  T
Q  318 ttccaacttatcaaattatatcatctctgttgaaagaatcaaacaattcattcacataccagctgagcctcctgccattgtggataataaccggccgcca 417  Q
    |||||||||||||||  |||| ||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || |||    
T  5288105 ttccaacttatcaaaccatattatctccgttgaaagaatcaaccaattcattcacataccagctgaaccgcctgccattgtggataataaccgaccacca 5288006  T
Q  418 tcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatccatgtc 481  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5288005 tcttcatggccttccaagggcaagattgatcttcaaggcttagaggtaatgttgcatccatgtc 5287942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 218 - 483
Target Start/End: Complemental strand, 5280478 - 5280213
Alignment:
Q  218 aactattggaaattctcctgttctgcgcaggccgtgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttggactagatggtt 317  Q
    |||| |||| || ||||||||| || ||||||| ||||||| ||||||||||||||||| || ||||||  ||||||||| ||||||||||| |||||||    
T  5280478 aactcttggtaactctcctgttgtgtgcaggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcgatggtt 5280379  T
Q  318 ttccaacttatcaaattatatcatctctgttgaaagaatcaaacaattcattcacataccagctgagcctcctgccattgtggataataaccggccgcca 417  Q
    |  |||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  5280378 taacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccgacctcca 5280279  T
Q  418 tcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatccatgtctt 483  Q
    | ||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  5280278 tattcgtggccttccaagggcaagattgatctccaaggcttggaggtaatgttgcatccatgtctt 5280213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 218 - 490
Target Start/End: Original strand, 5309027 - 5309299
Alignment:
Q  218 aactattggaaattctcctgttctgcgcaggccgtgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttggactagatggtt 317  Q
    |||| |||| || |||||| || || ||||||| ||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||| |||||||    
T  5309027 aacttttggcaactctccttttttgtgcaggccttgtgggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactcgatggtt 5309126  T
Q  318 ttccaacttatcaaattatatcatctctgttgaaagaatcaaacaattcattcacataccagctgagcctcctgccattgtggataataaccggccgcca 417  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||  |||||||||||||||| || || |||    
T  5309127 ttccaacttatcaaactatattatctctgtcgaaagaatcaaccaattcattcacataccagctaagcctccctccattgtggataataatcgacctcca 5309226  T
Q  418 tcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatccatgtcttcttttcc 490  Q
    |||||||||||||| ||||| || ||||||||| |||| ||||||||||  |||||||||| |||||||||||    
T  5309227 tcttcatggccttctaagggaaaaattgatcttgaaggcttagaggtaaaattgcatccatttcttcttttcc 5309299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 483
Target Start/End: Original strand, 5315809 - 5316001
Alignment:
Q  291 agcccaaatattttggactagatggttttccaacttatcaaattatatcatctctgttgaaagaatcaaacaattcattcacataccagctgagcctcct 390  Q
    ||||| ||||||||||||| ||||||||||||||||||| || || || |||||||||||||||||||| || ||||||||| | |||  ||||||||||    
T  5315809 agccccaatattttggactcgatggttttccaacttatcgaactacattatctctgttgaaagaatcaatcagttcattcacgttccatttgagcctcct 5315908  T
Q  391 gccattgtggataataaccggccgccatcttcatggccttccaagggcaagattgatcttcaagggttagaggtaatgttgcatccatgtctt 483  Q
    |||||||||||  |||| || || || |||||||||||||||||||| | ||||||| ||||||| ||||||||||  ||||||  |||||||    
T  5315909 gccattgtggaggataatcgacccccttcttcatggccttccaagggtaggattgatgttcaaggattagaggtaacattgcatttatgtctt 5316001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 5288737 - 5288656
Alignment:
Q  8 tgaagcacttctaaattttactgtcatcactgcagctttgctactcatcctacttcctcaaagatatctatccccaggtaat 89  Q
    ||||||||||| ||| || |||||||||||||||||| |  | || || |||||||||||  ||||| ||||||||||||||    
T  5288737 tgaagcacttcaaaacttgactgtcatcactgcagctcttttgcttattctacttcctcagggatatgtatccccaggtaat 5288656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 14947960 - 14947879
Alignment:
Q  8 tgaagcacttctaaattttactgtcatcactgcagctttgctactcatcctacttcctcaaagatatctatccccaggtaat 89  Q
    ||||||||||| ||| || |||||||||||||||||||||||  | || ||||||||||   ||||| |||| |||||||||    
T  14947960 tgaagcacttcaaaacttgactgtcatcactgcagctttgctgattattctacttcctcggggatatgtatcgccaggtaat 14947879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 5280724 - 5280643
Alignment:
Q  8 tgaagcacttctaaattttactgtcatcactgcagctttgctactcatcctacttcctcaaagatatctatccccaggtaat 89  Q
    ||||||||||| ||| || ||||||||||| ||||||||| | || || |||| ||||||  ||||| |||| |||||||||    
T  5280724 tgaagcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaat 5280643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 5393436 - 5393476
Alignment:
Q  123 tccctaaatataagcacattttcaaattattagatacattt 163  Q
    ||||||||||||||| |||||||||||||  ||||||||||    
T  5393436 tccctaaatataagcccattttcaaattacaagatacattt 5393476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 252 - 466
Target Start/End: Complemental strand, 31524646 - 31524432
Alignment:
Q  252 tgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttggactagatggttttccaacttatcaaattatatcatctctgttgaa 351  Q
    ||||||| |||||||||| |||||| |||  ||||  |||||||| ||||||||||||||||||||||||| |||||||||  | || ||||| ||||||    
T  31524646 tgtgggactgtctctttcgtatgcttttaatttgacaggagcccagatattttggactagatggttttccaccttatcaaacaacataatctcggttgaa 31524547  T
Q  352 agaatcaaacaattcattcacataccagctgagcctcctgccattgtggataataaccggccgccatcttcatggccttccaagggcaagattgatcttc 451  Q
    |||||||| || |||||  |||| ||||| || |||||||||||| ||||  ||||||| ||||||||| |||||||||||||||| | ||||||  |||    
T  31524546 agaatcaagcagttcatcgacattccagccgaacctcctgccattatggaggataaccgaccgccatctccatggccttccaagggtaggattgaagttc 31524447  T
Q  452 aagggttagaggtaa 466  Q
    |||| ||||||||||    
T  31524446 aaggcttagaggtaa 31524432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 9528539 - 9528501
Alignment:
Q  125 cctaaatataagcacattttcaaattattagatacattt 163  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  9528539 cctaaatataagctcattttcaaattattaaatacattt 9528501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 22213910 - 22213946
Alignment:
Q  123 tccctaaatataagcacattttcaaattattagatac 159  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  22213910 tccctaaatataagcaccttttcaaattaatagatac 22213946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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