View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1029-Insertion-4 (Length: 461)
Name: NF1029-Insertion-4
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1029-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Original strand, 43051241 - 43051696
Alignment:
| Q |
5 |
acagtttctactactt-aatttcttgttgtcatttttgactcattttccgtaatattcacatagagaataccgtctattaaattgtgtgcttctattcag |
103 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051241 |
acagtttctactacttgaatttcttgttgtcatttttgactcattttccgtaatattcacatagagaataccgtctattaaattgtgtgcttctattcag |
43051340 |
T |
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| Q |
104 |
tcggatcgatttgcaatggtctcaactcatcagagttaattgtttatttagcctctttatgctctctttttccattgaatttnnnnnnnnnnnnntgtcc |
203 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43051341 |
tcagatcgatttgcaatggtctcaactcatcagagttaattgtttatttagcctctttatgctctctttttccattgaatttaaaaaaaaaaa--tgtcc |
43051438 |
T |
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| Q |
204 |
tgatcatattcaggctttgctaattcnnnnnnncatttaaaaataaattctcaggttgaccaacttgtcgggaaaaaccatgtcttcaaacgcagtataa |
303 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051439 |
tgatcatattcaggctttgctaattctttttttcatttaaaaataaattctcaggttgaccaacttgtcgggaaaaaccatgtcttcaaacgcagtataa |
43051538 |
T |
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| Q |
304 |
tcttagtcaaagcctggtgctattatgagagccgaattcttggtgcacactatggcctgctctcaacatatgcagttgaaatattggtattatatattat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051539 |
tcttagtcaaagcctggtgctattatgagagccgaattcttggtgcacaccatggcctgctctcaacatatgcagttgaaatattggtattatatattat |
43051638 |
T |
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| Q |
404 |
caactgttttcattcatcagtgcgcggtcctctagaggtgagttattacttccgttga |
461 |
Q |
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| T |
43051639 |
caattgttttcattcatcagtgcgcggtcctctagaggtgagttattacttccgttga |
43051696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 43035256 - 43035709
Alignment:
| Q |
5 |
acagtttctactacttaa-tttcttgttgtcatttttgactcattttccgtaatattcacatagagaataccgtctattaaattgtgtgcttctattcag |
103 |
Q |
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|||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| || |
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| T |
43035256 |
acagtttccactacttgactttcttgttgtcatttttgactcattttccgtaatattcacatagcgaataccgtcaattaaattgtgtgcctctatttag |
43035355 |
T |
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| Q |
104 |
tcggatcgatttgcaatggtctcaactcatca--gagttaattgtttatttagcctctttatgctctctttttccattgaatttnnnnnnnnnnnnntgt |
201 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43035356 |
tcggatcg--ttgcaacggtctcaactcatcactgagttaattgtttatttagcctctttatgctctctttttccattgaattttttttaaaaaa--tgt |
43035451 |
T |
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| Q |
202 |
cctgatcatattcaggctttgctaattcnnnnnnncatttaaaaataaattctcaggttgaccaacttgtcgggaaaaaccatgtcttcaaacgcagtat |
301 |
Q |
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|||| ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43035452 |
cctgctcatattcaggctttgctaattctttttttcgtttaaaaataaattcttaggttgaccaacttgtcgggaaaaaccatgtcttcaaacaaagtat |
43035551 |
T |
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| Q |
302 |
aatcttagtcaaagcctggtgctattatgagagccgaattcttggtgcacactatggcctgctctcaacatatgcagttgaaatattggtattatatatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43035552 |
aatcttagtcaaagcctggtgctattatgagagccgaattcttggtgcacaccatggcctgctctcaacatatgcagttgaaatattggttttatatatt |
43035651 |
T |
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| Q |
402 |
atcaactgttttcattcatcagtgcgcggtcctctagaggtgagttattacttccgtt |
459 |
Q |
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| T |
43035652 |
atcaactgttttcattcatcagtgcgcggtcctctagaggtgagttatgtcttccgtt |
43035709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 31975997 - 31975907
Alignment:
| Q |
286 |
tcttcaaacgcagtataatcttagtcaaagcctggtgctattatgagagccgaattcttggtgcacactatggcctgctctcaacatatgc |
376 |
Q |
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|||||||||| ||||| ||| | | ||||| |||||||| |||||||| || ||||||||||| ||| |||| ||| |||| |||||||| |
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| T |
31975997 |
tcttcaaacgtagtatcatcctgattaaagcttggtgctactatgagagtcgtattcttggtgcccaccatgggctgatctctacatatgc |
31975907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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