View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1029-Insertion-6 (Length: 311)
Name: NF1029-Insertion-6
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1029-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 14526644 - 14526950
Alignment:
| Q |
6 |
caaaatctgccttcaaactatgatgaaaagagttcttctaaagttcaaggattgcaagaaaa-atataatctgtgtactaagatcataaatattgtaaac |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
14526644 |
caaaatctgccttcaaactatgatgaaaagagttcttctaaagttcaaggattgcaagaaaaaatataatcagtgtactaagatcataaatattgtaaac |
14526743 |
T |
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| Q |
105 |
aatataatcaaccaaagaaagtgattcagattggaccatccagaaaatgaagaaaccagtccctctcatattttctcaatgcctcaaactacttctaatc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14526744 |
aatataatcaaccaaagaaagtgattcagattggaccatccagaaaatgaagaaaccagtccctctcatattttctcaatgcctcaaactacttctaatc |
14526843 |
T |
|
| Q |
205 |
aagtttgtactactatcagaaactataatagcagaaccaagagcagagacagttatgataacatgtggccatcaagtagagcataacacaagcatctttg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14526844 |
aagtttgtactactatcagaaactataatagcagaaccaagagcaaagacagttatgataacatgtggccatcaagtagagcataacacaagcatctttg |
14526943 |
T |
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| Q |
305 |
ttccgaa |
311 |
Q |
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||||||| |
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| T |
14526944 |
ttccgaa |
14526950 |
T |
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