View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1029-Insertion-7 (Length: 262)

Name: NF1029-Insertion-7
Description: NF1029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1029-Insertion-7
NF1029-Insertion-7
[»] chr3 (17 HSPs)
chr3 (14-188)||(24497483-24497661)
chr3 (14-123)||(21584821-21584930)
chr3 (14-105)||(24923684-24923775)
chr3 (14-110)||(25084900-25084996)
chr3 (196-262)||(11396737-11396803)
chr3 (14-110)||(24920110-24920206)
chr3 (197-262)||(28907569-28907634)
chr3 (14-98)||(24981920-24982004)
chr3 (22-102)||(31825789-31825869)
chr3 (195-252)||(3848171-3848228)
chr3 (196-252)||(13867399-13867455)
chr3 (196-252)||(52134632-52134688)
chr3 (196-243)||(2733171-2733218)
chr3 (196-243)||(12570985-12571032)
chr3 (196-243)||(13547449-13547496)
chr3 (196-243)||(19769861-19769908)
chr3 (195-252)||(47761249-47761306)
[»] chr4 (3 HSPs)
chr4 (195-262)||(17404767-17404834)
chr4 (196-252)||(41813490-41813546)
chr4 (196-240)||(21207386-21207430)
[»] chr6 (11 HSPs)
chr6 (194-252)||(30906234-30906292)
chr6 (184-243)||(3066446-3066505)
chr6 (195-240)||(8977014-8977059)
chr6 (195-252)||(19121451-19121508)
chr6 (196-259)||(4659056-4659119)
chr6 (196-243)||(33051359-33051406)
chr6 (202-240)||(27447226-27447264)
chr6 (196-243)||(4294465-4294512)
chr6 (212-262)||(22681908-22681958)
chr6 (203-252)||(2918380-2918429)
chr6 (201-248)||(33481843-33481891)
[»] scaffold0318 (1 HSPs)
scaffold0318 (195-252)||(6532-6589)
[»] chr8 (8 HSPs)
chr8 (37-98)||(14261279-14261340)
chr8 (198-243)||(15610343-15610388)
chr8 (198-243)||(27428229-27428274)
chr8 (196-252)||(24279055-24279111)
chr8 (198-243)||(9374609-9374654)
chr8 (200-252)||(33199073-33199126)
chr8 (196-240)||(1849846-1849890)
chr8 (196-248)||(8164096-8164148)
[»] chr2 (2 HSPs)
chr2 (196-252)||(2040163-2040219)
chr2 (196-242)||(31412322-31412368)
[»] chr7 (10 HSPs)
chr7 (25-95)||(39955080-39955150)
chr7 (195-252)||(11646704-11646761)
chr7 (196-243)||(39445841-39445888)
chr7 (198-252)||(7448978-7449032)
chr7 (195-252)||(6841415-6841472)
chr7 (14-95)||(10575264-10575345)
chr7 (195-240)||(13764949-13764994)
chr7 (196-245)||(44548535-44548584)
chr7 (195-243)||(39704319-39704367)
chr7 (195-243)||(26906537-26906585)
[»] chr1 (6 HSPs)
chr1 (195-252)||(7604858-7604915)
chr1 (196-252)||(31768413-31768469)
chr1 (196-243)||(42773315-42773362)
chr1 (196-243)||(28237336-28237383)
chr1 (195-243)||(2953328-2953375)
chr1 (196-252)||(23597858-23597914)
[»] scaffold0475 (1 HSPs)
scaffold0475 (196-259)||(6353-6416)
[»] scaffold0003 (2 HSPs)
scaffold0003 (196-240)||(33478-33522)
scaffold0003 (202-240)||(40094-40132)
[»] scaffold0014 (1 HSPs)
scaffold0014 (196-243)||(33907-33954)
[»] chr5 (3 HSPs)
chr5 (200-243)||(29656065-29656108)
chr5 (198-243)||(4352639-4352684)
chr5 (196-240)||(26836401-26836445)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 24497483 - 24497661
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttgataa 113  Q
    |||| ||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  24497483 tgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgacattttcaagagaaaatttgagaa 24497582  T
Q  114 ----acaaagaaaaattggggatctagggttttgaaattgtaatttgaatttcaagtgtgaaaaatgaagaatgagatt 188  Q
        | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24497583 aacgaaatagaaaatttggggatctagggttttgaaattgtaatttgaatttcaagtgtgaataatgaagaatgagatt 24497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 21584821 - 21584930
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttgataa 113  Q
    |||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  21584821 tgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaatttgagaa 21584920  T
Q  114 acaaagaaaa 123  Q
    ||| ||||||    
T  21584921 acagagaaaa 21584930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 24923684 - 24923775
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaa 105  Q
    |||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  24923684 tgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacattttcaagagaaaa 24923775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 25084996 - 25084900
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttga 110  Q
    |||||||||| ||||||||||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  25084996 tgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacattttcgcgagaaaatttga 25084900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 11396803 - 11396737
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatataacatcaacaa 262  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  11396803 actagaacttttacccgtgctaccgcccgggtcataaacaatggagaagttaatataacatcaacaa 11396737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 24920110 - 24920206
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttga 110  Q
    |||||||||| ||||| || || || |||||||| ||||||||||| | |||||||||||||||||||||||| |||||||||  ||||||||||||    
T  24920110 tgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatttga 24920206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 28907634 - 28907569
Alignment:
Q  197 ctagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatataacatcaacaa 262  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||    
T  28907634 ctagaacttttacccgtgctactgcccgggtcataaacaatggagaaggtaatataacatcaacaa 28907569  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 24982004 - 24981920
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaa 98  Q
    |||||||||| ||||| || || || |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  24982004 tgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacattttcaa 24981920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 31825789 - 31825869
Alignment:
Q  22 cggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaagaga 102  Q
    |||||||| |||||||| || ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  31825789 cggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagaga 31825869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 3848228 - 3848171
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||||||||||||||||||| || ||||||||||||||| ||||||  |||||||    
T  3848228 tactagaacttttacccgtgctaccgtccgggtcataaacaaaggagaaactaatata 3848171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 13867399 - 13867455
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||  |||||||    
T  13867399 actagaacttttactcgtgctaccgctcgggtcataaacaatggagaagctaatata 13867455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 52134688 - 52134632
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||  |||||||    
T  52134688 actagatcttttacccatgctaccgcccgggtcataaacaatggagaagctaatata 52134632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 2733171 - 2733218
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  2733171 actagaacttttacccgtgctactgcccgggtcataaactatggagaa 2733218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 12570985 - 12571032
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||| |||||||| |||||| | |||||||||||||||||||||||    
T  12570985 actagagcttttacctgtgctaccacccgggtcataaacaatggagaa 12571032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 13547449 - 13547496
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||| |||||||| |||||| | |||||||||||||||||||||||    
T  13547449 actagagcttttacctgtgctaccacccgggtcataaacaatggagaa 13547496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 19769908 - 19769861
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||||||||||||||||||| |||||||| ||| || |||||||||    
T  19769908 actagaacttttacccgtgctaacgcccgggacattaaaaatggagaa 19769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 47761249 - 47761306
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||| |||||||| |||||||| ||  ||||||||||| ||||||||| ||||||||    
T  47761249 tactataacttttatccgtgctaccgttcgggtcataaataatggagaagttaatata 47761306  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 17404767 - 17404834
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatataacatcaacaa 262  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||    
T  17404767 tactagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatataacatcaacaa 17404834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 41813546 - 41813490
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||    
T  41813546 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatata 41813490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 21207386 - 21207430
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    ||||| |||||||||||||||| |||||||| ||| |||||||||    
T  21207386 actagtacttttacccgtgctaccgcccgggacattaacaatgga 21207430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 30906234 - 30906292
Alignment:
Q  194 gtactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  30906234 gtactagaacttttacccgtgctaccgcccgggtcataaacaacggagaaattaatata 30906292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 3066505 - 3066446
Alignment:
Q  184 agattattaggtactagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  3066505 agattatcaagtactagaacttttacccgtgctaccgcctgggtcataaacaatggagaa 3066446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 8977059 - 8977014
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8977059 tactagaacttttacccgtgctaccgcccgggtcataaacaatgga 8977014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 19121508 - 19121451
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||    
T  19121508 tactagaacttttacccgtgctaccgtccgggtcatagacaatggagaagttaatata 19121451  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 4659056 - 4659119
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatataacatcaa 259  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||  |||||||| |||||    
T  4659056 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatataagatcaa 4659119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 33051359 - 33051406
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  33051359 actagaacttttatccgtgctaccgcccgggtcataaacaatggagaa 33051406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 27447264 - 27447226
Alignment:
Q  202 acttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27447264 acttttacccgtgctaccgcccgggtcataaacaatgga 27447226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 4294512 - 4294465
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||||||||||||| | ||| ||| |||||||||||||||||||||    
T  4294512 actagaacttttacccatactaccgctcgggtcataaacaatggagaa 4294465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 22681958 - 22681908
Alignment:
Q  212 gtgctatcgcccgggtcataaacaatggagaatttaatataacatcaacaa 262  Q
    |||||| ||||| |||||||||||||||| || |||||||||||| |||||    
T  22681958 gtgctaccgcccaggtcataaacaatggaaaagttaatataacattaacaa 22681908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 2918380 - 2918429
Alignment:
Q  203 cttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||||||||||| |||||||| ||| || ||||||||| ||||||||    
T  2918380 cttttacccgtgctaccgcccgggacattaaaaatggagaagttaatata 2918429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 33481843 - 33481891
Alignment:
Q  201 aacttttacccgtgctatcgcccgggtcataaa-caatggagaatttaa 248  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  33481843 aacttttacccgtgctaccgcccaggtcataaaccaatggagaagttaa 33481891  T

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Target: scaffold0318 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 6589 - 6532
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  6589 tactagaacttttacccgtgctatcgcccgggtcataaccaatggagaaactaatata 6532  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 14261279 - 14261340
Alignment:
Q  37 tgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacattttcaa 98  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  14261279 tgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacattttcaa 14261340  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 15610343 - 15610388
Alignment:
Q  198 tagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  15610343 tagaacttttacccgtgctaccgcccgggtcataaacaatggagaa 15610388  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 27428229 - 27428274
Alignment:
Q  198 tagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||    
T  27428229 tagaacttttacccgtgctattgtccgggtcataaacaatggagaa 27428274  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 24279111 - 24279055
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||| |||||||||||||||| ||||| |||||||||||||||||  |||||||    
T  24279111 actagaatttttacccgtgctatcacccggatcataaacaatggagaagctaatata 24279055  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 9374609 - 9374654
Alignment:
Q  198 tagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||    
T  9374609 tagaacttttatccgtgctaccgcccgggtcataaacaaaggagaa 9374654  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 33199126 - 33199073
Alignment:
Q  200 gaacttttacccgtgctatcgccc-gggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||  |||||||    
T  33199126 gaacttttacccgtgctatcacccggggtcataaacaatggagaagataatata 33199073  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 1849846 - 1849890
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||    
T  1849846 actagaacatttacccgtgctaccacccgggtcataaacaatgga 1849890  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 8164148 - 8164096
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaa 248  Q
    |||||| ||||||||||||||| |||||||| ||| || ||||||||| ||||    
T  8164148 actagatcttttacccgtgctaccgcccgggacattaaaaatggagaagttaa 8164096  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 2040163 - 2040219
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  2040163 actagaacttttacccgtgctaccgcccgggtcataaataatggagaaattaatata 2040219  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 31412322 - 31412368
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggaga 242  Q
    ||||||||||||| |||||||||| || || ||||||||||||||||    
T  31412322 actagaacttttatccgtgctatcacctggatcataaacaatggaga 31412368  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 39955080 - 39955150
Alignment:
Q  25 agaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacatttt 95  Q
    |||||||||||||| |||||||| ||||||||||| | |||||| ||||| |||||||| |||||||||||    
T  39955080 agaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 11646704 - 11646761
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||    
T  11646704 tactagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatata 11646761  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 39445888 - 39445841
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  39445888 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaa 39445841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 7448978 - 7449032
Alignment:
Q  198 tagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||    
T  7448978 tagaacttttatccgtgctaccgcccgagtcataaacaatggagaagttaatata 7449032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 6841472 - 6841415
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||  |||||||    
T  6841472 tactagatcttttacccgtgctactgcccgggtcataaacaatggagaagctaatata 6841415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 10575345 - 10575264
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcgcctccctttccgagtcccttacctccctttccacggcctgacatttt 95  Q
    |||| |||||||||||||| |  ||||||||||| || |||||||| | ||| ||||||||||||||||| || ||||||||    
T  10575345 tgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttt 10575264  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 13764994 - 13764949
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  13764994 tactagaacttttacccgtgctaccgcccgagtcataaacaatgga 13764949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 44548584 - 44548535
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatt 245  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  44548584 actagtacttttacccgtgctaccgcccgggtcataaactatggagaatt 44548535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 39704319 - 39704367
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  39704319 tactataacttttacccgtgctaccgcccaggtcataaacaatggagaa 39704367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 26906537 - 26906585
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||| |||||||||||||||| |||||||| ||| || |||||||||    
T  26906537 tactaggacttttacccgtgctaccgcccgggacattaaaaatggagaa 26906585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 7604858 - 7604915
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||    
T  7604858 tactagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatata 7604915  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 31768413 - 31768469
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||    
T  31768413 actagaacttttacccgtgctaccgcccggatcataaacaatggagaaactaatata 31768469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 42773362 - 42773315
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  42773362 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaa 42773315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 28237336 - 28237383
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||| |||||||||||||| | |||||||||||||||| ||||||    
T  28237336 actagaatttttacccgtgctaccacccgggtcataaacaaaggagaa 28237383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 2953375 - 2953328
Alignment:
Q  195 tactagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||||| |||||| || |||||| ||||||||||||||||||    
T  2953375 tactagaactttt-cccgtgataccgcccgagtcataaacaatggagaa 2953328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 23597858 - 23597914
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatata 252  Q
    |||| ||||||||||||||| | || |||| |||||||||||||||||  |||||||    
T  23597858 actaaaacttttacccgtgccaccgtccggctcataaacaatggagaaactaatata 23597914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 6353 - 6416
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaatttaatataacatcaa 259  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||  |||||||| |||||    
T  6353 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatataagatcaa 6416  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 33478 - 33522
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  33478 actagaacttttacccgtgctaccgcccgagtcataaacaatgga 33522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 40094 - 40132
Alignment:
Q  202 acttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  40094 acttttacccgtgctaccgcccgggtcataaacaatgga 40132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 33954 - 33907
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  33954 actagaacttttacccgtgctactgcccgggtcataaacaatgaagaa 33907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 29656065 - 29656108
Alignment:
Q  200 gaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  29656065 gaacttttacccgtgctaccgcccgggtcataaacaaaggagaa 29656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 4352684 - 4352639
Alignment:
Q  198 tagaacttttacccgtgctatcgcccgggtcataaacaatggagaa 243  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||    
T  4352684 tagaacttttacctgcgctaccgcccgggtcataaacaatggagaa 4352639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 26836401 - 26836445
Alignment:
Q  196 actagaacttttacccgtgctatcgcccgggtcataaacaatgga 240  Q
    ||||| |||||||||||||||| |||||||| ||| |||||||||    
T  26836401 actaggacttttacccgtgctaccgcccgggacattaacaatgga 26836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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