View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10290_high_1 (Length: 893)
Name: NF10290_high_1
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 737
Target Start/End: Complemental strand, 11231617 - 11230899
Alignment:
| Q |
18 |
agataatgaaactcaatttttgtattcagaatccatgcaattcaattccaaacacttccacattctcatatcgcaacgagttatccatttctgtgtatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231617 |
agataatgaaactcaatttttgtattcagaatccatgcaattcaattc-aaacacttccacattctcatatcgcaacgagttatccatttctgtgtatga |
11231519 |
T |
|
| Q |
118 |
ttctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaactctccgaagtaatgctcaattca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
11231518 |
ttctcaattttatgataatatttcacttgcatgttatttttttattgtactctttgtccatgatgcatgctgttaactctccgaagttatgctcaattca |
11231419 |
T |
|
| Q |
218 |
actaactgatatttacgnnnnnnnnngccttcgtttttggtatcaacagtcacaaatatacaacagtcgacaacaactttggtttccttcagctcttggc |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231418 |
actaactgatatttacgtttttttttgccttcgtttttggtatcaacagtcacaaatatacgacagtcgacaacaactttggtttccttcagctcttggc |
11231319 |
T |
|
| Q |
318 |
attcatgttcctcaacagattaggctagcacagcggatcacagacccggataccatggctagccatttattcagtgtcacattgtggtttatttggaagg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
11231318 |
attcatgttcctcaacagattaggctagcacagtggatcacagactcggataccatggctagccatttattcggtgttacattgtggtttatttggaagg |
11231219 |
T |
|
| Q |
418 |
gttggaaccaattgatttttaacaaaacacctttctgttgtgtccatcgctatggaggaatccagattttctgcagagttttttaacgctaatccctcaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11231218 |
gttggaaccaattgatttttaacaaaacacctttctggtgtgtccatcgctatggaggaatccagattttccgcagagttttttaacgctaatccctcaa |
11231119 |
T |
|
| Q |
518 |
agctgaagccaaccatagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcac |
617 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231118 |
agccgaagccaaccatagtttcagagccagaaatcttggagcagccgaacattggcacaacaaggatcaaagtagatgaaggatgttttcaaaatggcac |
11231019 |
T |
|
| Q |
618 |
aactggttacgttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtt |
717 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11231018 |
aactggttaggttgcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtt |
11230919 |
T |
|
| Q |
718 |
tgtgtgattgttgctgttat |
737 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11230918 |
tgtgtgattgttgctgttat |
11230899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 734 - 880
Target Start/End: Complemental strand, 11230490 - 11230344
Alignment:
| Q |
734 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
833 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11230490 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
11230391 |
T |
|
| Q |
834 |
tcctatatccaacggtggttgcttaggagtgattccccgtctctgct |
880 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11230390 |
tcctatatccaacgatggttgcttaggagtgattccccgtctctgct |
11230344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 531 - 737
Target Start/End: Complemental strand, 11243292 - 11243086
Alignment:
| Q |
531 |
catagttttagagccagaaatcttggagcagccgaacattggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggttacgtt |
630 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||| |||||||| || ||| || |||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
11243292 |
catagtttcagagccagaaatctgggagtagccgaacgttggcacggcagagattaacatagatgcaggatgttttcaaaatggcacaactggttaggtt |
11243193 |
T |
|
| Q |
631 |
gcttagcacgggatcacactggtttgttgtaatggtgcattaaccaataatttcacattagtcttagaccaacatacaatgtatgtttgtgtgattgttg |
730 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||||||||| || |
|
|
| T |
11243192 |
gcttagcacgggatcacactgttttgttgtaatgctgcagtaaccaaaaattccgcattagtctcagaccaacatacaatgtatctttgtgtgattggtg |
11243093 |
T |
|
| Q |
731 |
ctgttat |
737 |
Q |
| |
|
||||||| |
|
|
| T |
11243092 |
ctgttat |
11243086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 11243523 - 11243389
Alignment:
| Q |
96 |
agttatccatttctgtgtatgattctcaattttatgataatatttcacttgcatgttannnnnnnattgtactctttgtccatgatgcatgttgttaact |
195 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||| || ||||||||||||| | ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11243523 |
agttatccagttctgtgtatgattctcaattttctaatactaattcacttgcatgtgatttttt-attgtactctttgtcgatgatgcatgtcgttaact |
11243425 |
T |
|
| Q |
196 |
ctccgaagtaatgctcaattcaactaactgatattt |
231 |
Q |
| |
|
||| |||| |||||||||| || |||||||||||| |
|
|
| T |
11243424 |
ctcataagttatgctcaatttaattaactgatattt |
11243389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 11243635 - 11243595
Alignment:
| Q |
42 |
ttcagaatccatgcaattcaattccaaacacttccacattct |
83 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
11243635 |
ttcagaatccatacaattcaatt-caaacacttccacattct |
11243595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 373 - 625
Target Start/End: Complemental strand, 12919532 - 12919278
Alignment:
| Q |
373 |
tggctagccatttattcagtgtcacattgtggtttatttggaagggttggaaccaattgatttttaacaaaacacctttctgt--tgtgtccatcgctat |
470 |
Q |
| |
|
||||||| ||||||| |||||| ||| ||| ||| |||||||||||| |||||||||||||||| || |||||| |||||||| ||| || | || | |
|
|
| T |
12919532 |
tggctagtcatttatccagtgttacactgtcgttgatttggaagggtcggaaccaattgattttcaataaaacaactttctgtcctgtatctactgcgaa |
12919433 |
T |
|
| Q |
471 |
ggaggaatccagattttctgcagagttttttaacgctaatccctcaaagctgaagccaaccatagttttagagccagaaatcttggagcagccgaacatt |
570 |
Q |
| |
|
||| ||||| ||||||||||| ||||||| |||||||| | ||| ||||| | || ||||| ||| | ||||| || |||||| ||||| || |
|
|
| T |
12919432 |
ggaaatatccaatttttctgcagaattttttattgctaatccgttgaagatgaagtctgtcagagtttcagaactagaaagctgggagcaaccgaatgtt |
12919333 |
T |
|
| Q |
571 |
ggcacgacaaggatcaaagtagatgaaggatgttttcaaaatggcacaactggtt |
625 |
Q |
| |
|
||||| |||| |||||| ||||||| |||||| ||||||| ||| |||||||||| |
|
|
| T |
12919332 |
ggcacaacaaagatcaatgtagatgcaggatgctttcaaactggtacaactggtt |
12919278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University