View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10290_high_16 (Length: 324)
Name: NF10290_high_16
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_high_16 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 14174842 - 14174534
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
115 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14174842 |
aatatatggacgaattgatagacatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctatttcctcttccga |
14174743 |
T |
|
| Q |
116 |
tgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaa |
215 |
Q |
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|||||||||||||||||| | | |||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14174742 |
tgttggcatcaccgccctagatgccattatctatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgattaa |
14174643 |
T |
|
| Q |
216 |
ttttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
14174642 |
ttttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctatttctataactatgctgaaaaacattttgaatatt |
14174543 |
T |
|
| Q |
316 |
acttttctt |
324 |
Q |
| |
|
||||||||| |
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|
| T |
14174542 |
acttttctt |
14174534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 952202 - 951896
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
115 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
952202 |
aatatatggaggaattgatagagatatctgataaaggaaattacaagggcaattagagactctttttctatgttgtgattgttgctacttcctcttccga |
952103 |
T |
|
| Q |
116 |
tgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaa |
215 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
952102 |
tgttggcaccaccgcccttgctgccattatcaatctctccaattcatccagccgtgacagatatatctagcagcgaaaattatgattcaactttgattaa |
952003 |
T |
|
| Q |
216 |
ttttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatatt |
315 |
Q |
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|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
952002 |
ttttgaacttaaatctaataaaaaacattatactttgtggaaggtgttatttctctttcaatttgtttctataactatgctgaaaaacattttgaatatt |
951903 |
T |
|
| Q |
316 |
acttttc |
322 |
Q |
| |
|
||||||| |
|
|
| T |
951902 |
acttttc |
951896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 9462178 - 9462240
Alignment:
| Q |
149 |
tctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttga |
211 |
Q |
| |
|
|||||||||||||||| | || ||| |||||||| || |||||||||||||||||| ||||| |
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| T |
9462178 |
tctctccaattcatccgaccgtgacatgtatatctggcagcgaaaattatgattcaattttga |
9462240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 258236 - 258530
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
258236 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggaaattagagactctttttctttgttgtgactgttgctacttcctcttccga |
258335 |
T |
|
| Q |
116 |
tgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaa |
215 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |
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| T |
258336 |
tgttggcatcaccgcctttgctgccattatcaatctctccaattcatccagccatgacaggtatatctagcagcgaaaattatgattcaact-------- |
258427 |
T |
|
| Q |
216 |
ttttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
258428 |
------acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctgtttttataactatgctgaaaaacattttgaatatt |
258521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 40723281 - 40723576
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723281 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
40723380 |
T |
|
| Q |
116 |
tgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaa |
215 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
40723381 |
tgttggcatcaccgcccttgttgccattatcaatctctccaatttatccggccgtgacaggtatatctagccgcgaaaattatgattcaact-------- |
40723472 |
T |
|
| Q |
216 |
ttttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctg--aaaaacattttgaata |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
40723473 |
------acttaagtctgttaaaaaacattatactttgtggaa-gtgttatttctctttcaatctgtttctataactatgctgaaaaaaacattttgaata |
40723565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 33288260 - 33288196
Alignment:
| Q |
149 |
tctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgatt |
213 |
Q |
| |
|
|||||||||||||||| | || ||||||||||| | | || ||||||||||||||| ||||||| |
|
|
| T |
33288260 |
tctctccaattcatccgaccgtgacaggtatatccaccagccaaaattatgattcaattttgatt |
33288196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 10714738 - 10714542
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10714738 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
10714639 |
T |
|
| Q |
116 |
tgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgat |
212 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10714638 |
tgttggcatcaccacccttgctgccattatcaatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgat |
10714542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 10928508 - 10928312
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10928508 |
aatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccga |
10928409 |
T |
|
| Q |
116 |
tgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgat |
212 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10928408 |
tgttggcatcaccacccttgctgccattatcaatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgat |
10928312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 8922009 - 8922131
Alignment:
| Q |
16 |
aatatatggaggaattgatagagatatctgagaaaggaagttaca-agggcaattagagactctttttctttgttgtgattgt--tgctacttcctcttc |
112 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| ||| |||||||| |||||| |||| |||||||| |||||| |
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| T |
8922009 |
aatatgtggaggaatggatagagatatctgagataggaagttacagagggcgattagacactgtttttcttcgttgtgtttgtgctgctactttctcttc |
8922108 |
T |
|
| Q |
113 |
cgatgttggcatcaccgcccttg |
135 |
Q |
| |
|
||||||| ||||| ||||||||| |
|
|
| T |
8922109 |
cgatgttcgcatcgccgcccttg |
8922131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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