View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10290_high_22 (Length: 270)

Name: NF10290_high_22
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10290_high_22
NF10290_high_22
[»] chr2 (4 HSPs)
chr2 (18-259)||(3220329-3220570)
chr2 (24-257)||(12504761-12504994)
chr2 (24-257)||(14680932-14681165)
chr2 (25-167)||(39587451-39587607)
[»] scaffold0014 (2 HSPs)
scaffold0014 (24-257)||(173554-173787)
scaffold0014 (24-257)||(143760-143993)
[»] chr8 (3 HSPs)
chr8 (24-257)||(44197938-44198171)
chr8 (24-256)||(20793481-20793713)
chr8 (24-257)||(23928980-23929213)
[»] chr7 (7 HSPs)
chr7 (24-257)||(48513447-48513680)
chr7 (20-256)||(3718237-3718472)
chr7 (24-257)||(42105186-42105419)
chr7 (24-257)||(48727889-48728122)
chr7 (66-118)||(34529808-34529860)
chr7 (66-118)||(45574882-45574934)
chr7 (66-115)||(17990443-17990492)
[»] chr6 (1 HSPs)
chr6 (24-257)||(29651815-29652048)
[»] chr5 (4 HSPs)
chr5 (24-257)||(36678978-36679211)
chr5 (24-257)||(36662567-36662800)
chr5 (20-257)||(23203822-23204059)
chr5 (20-247)||(43560199-43560431)
[»] chr3 (4 HSPs)
chr3 (24-257)||(38327706-38327939)
chr3 (20-257)||(55488685-55488922)
chr3 (24-257)||(46073393-46073624)
chr3 (66-118)||(35029014-35029066)
[»] chr1 (4 HSPs)
chr1 (24-257)||(52609025-52609258)
chr1 (20-257)||(52887743-52887984)
chr1 (20-257)||(29886994-29887230)
chr1 (20-124)||(13728701-13728805)
[»] scaffold1284 (1 HSPs)
scaffold1284 (20-247)||(143-375)
[»] chr4 (1 HSPs)
chr4 (66-253)||(56288593-56288780)
[»] scaffold0318 (1 HSPs)
scaffold0318 (96-256)||(19891-20051)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 3220570 - 3220329
Alignment:
Q  18 aaccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcag 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220570 aaccacgagtggcgaaggagaacgaatcgcgaaagcagcgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcag 3220471  T
Q  118 tgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3220470 tgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgtttttgtttcgcg 3220371  T
Q  218 aagaacaccttcgacttgttgcttccattgaaggtagttcat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3220370 aagaacaccttcgacttgttgcttccattgaaggtagttcat 3220329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 12504994 - 12504761
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12504994 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 12504895  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  12504894 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 12504795  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  12504794 accttcgacttgttgcttccattgaaggtagttc 12504761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 14680932 - 14681165
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14680932 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 14681031  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  14681032 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 14681131  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  14681132 accttcgacttgttgcttccattgaaggtagttc 14681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 39587607 - 39587451
Alignment:
Q  25 agtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgtt--------------cttcc 110  Q
    ||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||              |||||    
T  39587607 agtggcgaatgagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcgaatcttgttcttcc 39587508  T
Q  111 cattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataa 167  Q
    ||||||||||||||| | |||| |||||| |||||||||||| ||||||||||||||    
T  39587507 cattcagtgtaagcaagattctccgttccagcttcgcgcgctgcatctgtgagataa 39587451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 173787 - 173554
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  173787 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 173688  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  173687 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 173588  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  173587 accttcgacttgttgcttccattgaaggtagttc 173554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 143993 - 143760
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    |||||| ||||||||||||| |||||||| || |||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  143993 gagtggagaaggagaacgaaccgcgaaagtagcgaaggcgagatcgttgaaagaatccaggtgctgagcaatgaatcttgttcttcccattcagtgtaag 143894  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| ||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| ||||||||||    
T  143893 caggattctccgttccagcttcgcacgctgcatctgtgagataaaccgatggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 143794  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  143793 accttcgacttgttgcttccattgaaggtagttc 143760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 44198171 - 44197938
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44198171 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 44198072  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  44198071 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 44197972  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  44197971 accttcgacttgttgcttccattgaaggtagttc 44197938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 20793713 - 20793481
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20793713 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgatatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 20793614  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    || | |||| |||||| |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  20793613 catgattctccgttccagcttcgcgcgctgcatctgtgagataaacctgtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 20793514  T
Q  224 accttcgacttgttgcttccattgaaggtagtt 256  Q
    |||||||||||||||||||||||||||||||||    
T  20793513 accttcgacttgttgcttccattgaaggtagtt 20793481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 23928980 - 23929213
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23928980 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaattcaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 23929079  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| || | |||||| |||||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  23929080 caggattatccgttccagcttcgcgcgctgcatctgtgagataaatcagtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 23929179  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    |||||| |||||||||||||||||||||||||||    
T  23929180 accttcaacttgttgcttccattgaaggtagttc 23929213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 48513447 - 48513680
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48513447 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 48513546  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  48513547 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 48513646  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  48513647 accttcgacttgttgcttccattgaaggtagttc 48513680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 3718237 - 3718472
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 119  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  3718237 ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcaaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcggtg 3718336  T
Q  120 taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa 219  Q
    |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| |    
T  3718337 taagcaggattcttcgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcg-a 3718435  T
Q  220 gaacaccttcgacttgttgcttccattgaaggtagtt 256  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3718436 gaacaccttcgacttgttgcttccattaaaggtagtt 3718472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 42105419 - 42105186
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42105419 gagtggcgaaggagaacgaatcgcgaaagtagccaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 42105320  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| ||||  ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | ||||||||    
T  42105319 caggattctcggttccagcttcgcgcgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccacgaagaac 42105220  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    |||||| |||||||||||||||||||||||||||    
T  42105219 accttcaacttgttgcttccattgaaggtagttc 42105186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 48727889 - 48728122
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  48727889 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccatttagtgtaag 48727988  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||    
T  48727989 caggattctccgttccagctttgcgcgctgcatgtgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 48728088  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||| ||||||||||||||||||    
T  48728089 accttcgacttgttgtttccattgaaggtagttc 48728122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 34529808 - 34529860
Alignment:
Q  66 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 118  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  34529808 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 34529860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 45574882 - 45574934
Alignment:
Q  66 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 118  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  45574882 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 45574934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 17990492 - 17990443
Alignment:
Q  66 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattc 115  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||    
T  17990492 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattc 17990443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 29652048 - 29651815
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29652048 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 29651949  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  29651948 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 29651849  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  29651848 accttcgacttgttgcttccattgaaggtagttc 29651815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 36678978 - 36679211
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36678978 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 36679077  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  36679078 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 36679177  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  36679178 accttcgacttgttgcttccattgaaggtagttc 36679211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 36662800 - 36662567
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36662800 gagtggcgaaggagaacgaatcgcgaaagtagcgaagccgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 36662701  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  36662700 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 36662601  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  36662600 accttcgacttgttgcttccattgaaggtagttc 36662567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 23203822 - 23204059
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 119  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||    
T  23203822 ccacgagtggcgaaggagaacgaatcgcgaaagtagcaaaggcgaaatcgttgaaagaatccaggtgtagagcaattaatcgtgttcttcccattcagtg 23203921  T
Q  120 taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa 219  Q
    ||| |||| |||| |||||||||| | || ||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||    
T  23203922 taaacaggattctccgttcctgctccacgtgctgcatttatgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaa 23204021  T
Q  220 gaacaccttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23204022 gaacaccttcgacttgttgcttccattgaaggtagttc 23204059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 43560431 - 43560199
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttctt------cccat 113  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||| |||||||||||||      || ||    
T  43560431 ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggtgcagagcaatgaatcttgttcttgttcttccaat 43560332  T
Q  114 tcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgttt 213  Q
    |||||||||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||     
T  43560331 tcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttc 43560232  T
Q  214 cgcgaagaacaccttcgacttgttgcttccattg 247  Q
    |||||||||||||||||| |||||||||||||||    
T  43560231 cgcgaagaacaccttcga-ttgttgcttccattg 43560199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 38327706 - 38327939
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38327706 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 38327805  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  38327806 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 38327905  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  38327906 accttcgacttgttgcttccattgaaggtagttc 38327939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 55488922 - 55488685
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 119  Q
    |||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  55488922 ccacgagtggcgaaggagaacgaaccgcgaaagtagcgaaggcgaaatcgttgaaagaacccaggtgcagagcaatgaatcttgttcttcccattcagtg 55488823  T
Q  120 taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa 219  Q
    |||||||  |||| |||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||    
T  55488822 taagcagaattctccgttccagcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaa 55488723  T
Q  220 gaacaccttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55488722 gaacaccttcgacttgttgcttccattgaaggtagttc 55488685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 46073624 - 46073393
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46073624 gagtggcaaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 46073525  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||||| | | |||||| ||||||||||    
T  46073524 caggattctccgttccagcttcgcgcgctgcatctgtgagataaacc--tggaatctcaggtgaaatcacaaatttcaacatcttcgttccgcgaagaac 46073427  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||| ||||||||||||||||||    
T  46073426 accttcgacttgttgtttccattgaaggtagttc 46073393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 35029014 - 35029066
Alignment:
Q  66 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 118  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  35029014 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 35029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 52609025 - 52609258
Alignment:
Q  24 gagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaag 123  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52609025 gagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaag 52609124  T
Q  124 caggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaac 223  Q
    |||| |||| |||||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| ||||||||||    
T  52609125 caggattctccgttccagcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaac 52609224  T
Q  224 accttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||    
T  52609225 accttcgacttgttgcttccattgaaggtagttc 52609258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 52887984 - 52887743
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52887984 ccacgagtggcgaaggagaacgaatcgcgaaagtagtgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtg 52887885  T
Q  120 taagcaggtttcttcgttcctgctt----cgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcg 215  Q
    |||||||| |||| |||||||||||    |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| | ||| || ||    
T  52887884 taagcaggattctccgttcctgcttcgtgcgcgcgctgcaactgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcattccg 52887785  T
Q  216 cgaagaacaccttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52887784 cgaagaacaccttcgacttgttgcttccattgaaggtagttc 52887743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 29887230 - 29886994
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 119  Q
    ||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29887230 ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggtgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtg 29887131  T
Q  120 taagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaa 219  Q
    |||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| | |||||| ||||||    
T  29887130 taagcaggattctccgttcctgcttcgcgcgctgcat-tgtgagataaaccggtggaatctcaggcgaaatcacaaatttcaccatcttcgttccgcgaa 29887032  T
Q  220 gaacaccttcgacttgttgcttccattgaaggtagttc 257  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  29887031 gaacaccttcgacttgttgtttccattgaaggtagttc 29886994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 13728805 - 13728701
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtg 119  Q
    ||||||||| || || || ||||| ||||||||||| |||| | |||| ||||| | |||||| ||||| || | ||||||||||||||||||||| |||    
T  13728805 ccacgagtgacggagaagcacgaaacgcgaaagcagagaagacgaaatagttgataaaatccatgtgcaaaggagagaatcttgttcttcccattcggtg 13728706  T
Q  120 taagc 124  Q
    |||||    
T  13728705 taagc 13728701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 375 - 143
Alignment:
Q  20 ccacgagtggcgaaggagaacgaatcgcgaaagcagtgaaggctaaatcgttgaaagaatccaggtgcagagcaaagaatcttgttctt------cccat 113  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||| |||||||||||||      || ||    
T  375 ccacgagtggcgaaggagaacgaatcgcgaaagtagcgaaggcgaaatcattgaaagaatccaggtgcagagcaatgaatcttgttcttgttcttccaat 276  T
Q  114 tcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgttt 213  Q
    |||||||||||||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||     
T  275 tcagtgtaagcaggattctccgttcctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttc 176  T
Q  214 cgcgaagaacaccttcgacttgttgcttccattg 247  Q
    |||||||||||||||||| |||||||||||||||    
T  175 cgcgaagaacaccttcga-ttgttgcttccattg 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 56288593 - 56288780
Alignment:
Q  66 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagat 165  Q
    ||||| || |||||||| || || |||| ||||||||||||||||||||| || || || || |||| |||||| ||  |||| ||  | || |||||||    
T  56288593 atcgtggagagaatccatgtacacagcagagaatcttgttcttcccattcggtatacgccggattctccgttccggcggcgcgagcagcgtcggtgagat 56288692  T
Q  166 aaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 253  Q
    | |||||||||||||| || ||||  |||  ||||||| | |||||  |||| | ||| |||||||| ||||| ||||||||||||||    
T  56288693 acaccggtggaatctgcggcgaaacgacatgtttcaccatcttcgtaccgcgcaaaactccttcgacctgttgtttccattgaaggta 56288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 19891 - 20051
Alignment:
Q  96 gaatcttgttcttcccattcagtgtaagcaggtttcttcgttcctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaa 195  Q
    |||||||| |||||||||||||  || ||||| || | | |||| |||||||| ||  ||| | ||||||||||||||||||| || || |||| || ||    
T  19891 gaatcttgctcttcccattcagaatacgcagggttttccattccagcttcgcgagcgacatgtttgagataaaccggtggaatttgtggagaaaccataa 19990  T
Q  196 atttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagtt 256  Q
    |||||||| ||||  || | || |  |||||||| ||||| ||||||||||  ||||||||    
T  19991 atttcaccatttttcttcctcgcaacacaccttctacttgctgcttccattagaggtagtt 20051  T

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