View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10290_high_25 (Length: 249)
Name: NF10290_high_25
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1698803 - 1698564
Alignment:
| Q |
1 |
cggtaagtagtggaatttcggtggttgagtctaagggagggtagcagttgagaaagataatttgatctggttttgtatttaaactgcataaaaaccatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1698803 |
cggtaagtagtggaatttcggtggttgagtctaagggagggtagcagttgagaaagataatttgatctggttttgtatttaaactgcataaaaaccatat |
1698704 |
T |
|
| Q |
101 |
tgatactcatgagtcatgaggtagcattatatatcaattgaaaaagatggtaaatgacttgtacaagtcacatatttataggactctgactcaagtttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1698703 |
tgatactcatgagtcatgaggtagcattatatatcaattgaaaaagacggtaaatgacttgtacaagtcacatatttataggactctgactcaagtttgt |
1698604 |
T |
|
| Q |
201 |
atctaactcaagatgaattacaactaagttattacctttg |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1698603 |
atctaactctagatgaattacaactaagttattacctttg |
1698564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University