View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_high_4 (Length: 568)
Name: NF10290_high_4
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 269 - 551
Target Start/End: Complemental strand, 2708535 - 2708253
Alignment:
| Q |
269 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactatgcagattctttgtgctgaagactaaatatg |
368 |
Q |
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| T |
2708535 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactgtgcagattctttgtgctgaagactaaatatg |
2708436 |
T |
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| Q |
369 |
ctactctcaaatatggttttatatttatttctaggatttgtttctgaaccaaggctggagatgtgtgctataatggttcagtcaacatgattactttaac |
468 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2708435 |
ctactctcaaatatggtcttatatttatttctaggatttgtttctgaaccaaggctggagatgtgtgctataatggttcagtcaacatgattactttaac |
2708336 |
T |
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| Q |
469 |
tgaattatgtcatgttgagtcagttgggatagataactgtttctatagggtgttagttagctagctggttattatgtctatta |
551 |
Q |
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| T |
2708335 |
tgaattatgtcatgttgagtcagttgggatagataactgtttctaaagggtgttagttagctagctggttactatgtctatta |
2708253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 55 - 286
Target Start/End: Complemental strand, 2702068 - 2701837
Alignment:
| Q |
55 |
atatttcagcttttgccagaggaagttggggaagcgttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatca |
154 |
Q |
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| T |
2702068 |
atatttcagattttgacagaggaagttgaagcagagttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatca |
2701969 |
T |
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| Q |
155 |
aagagctatgtgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaatttgactgc |
254 |
Q |
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| T |
2701968 |
gagagctatgtgaccaggttctgtctctttcagaatacagagctcagctctatgattatctaaagagtaggatgaataccattgcacccaatttgactgc |
2701869 |
T |
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| Q |
255 |
tatgaccggggagcttgttggtgctcgcctca |
286 |
Q |
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| T |
2701868 |
tatggttggggagcttgttggtgctcgcctca |
2701837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 57 - 286
Target Start/End: Original strand, 26715327 - 26715556
Alignment:
| Q |
57 |
atttcagcttttgccagaggaagttggggaagcgttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatcaaa |
156 |
Q |
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||||||| ||||| ||||||| |||| || || | |||| ||||| | |||||||| |||||||||||||||||||| || |||||| ||||||| | | |
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| T |
26715327 |
atttcagattttgtcagaggaggttgaggcagaggtgaaggaagcttcagtgatatcaatgggaactgaaattggtgagcttgatttgtcaaatattaga |
26715426 |
T |
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| Q |
157 |
gagctatgtgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaatttgactgcta |
256 |
Q |
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||||| ||||| ||| |||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26715427 |
gagctctgtgatcaggttttgtctctatcagaatacagagctcaactctatgattatctcaagagtaggatgaacaccattgcacccaatttgactgcta |
26715526 |
T |
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| Q |
257 |
tgaccggggagcttgttggtgctcgcctca |
286 |
Q |
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|| |||||||||||||||||||| |||| |
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| T |
26715527 |
tggttggggagcttgttggtgctcgactca |
26715556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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