View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_10 (Length: 440)
Name: NF10290_low_10
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 24 - 424
Target Start/End: Complemental strand, 46643156 - 46642756
Alignment:
| Q |
24 |
atactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatccaattttcctatatcattaggtaaacagcctttcattt |
123 |
Q |
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| T |
46643156 |
atactttcaggcaattcaccaacaaactcattaaaactaacatcaaacactgtcactttatccaattttcctatatcattaggtaaacagcctttcattc |
46643057 |
T |
|
| Q |
124 |
tgctgttcgtcataattatctcattgattgtatccttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaacacaacaacaga |
223 |
Q |
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| T |
46643056 |
tgctgttcgtcataattatctcgttgattgtatctttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaacacaacaacaga |
46642957 |
T |
|
| Q |
224 |
agctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcctttaggaaca |
323 |
Q |
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| T |
46642956 |
agctggcatctttccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcctttaggaaca |
46642857 |
T |
|
| Q |
324 |
tttccttgaaaattgttgtatcttatgtctaagtattttaatgaaggaatgcaaagaacaacctccggaaatgttcctgagaattggttgttactgatgt |
423 |
Q |
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| T |
46642856 |
tttccttgaaaattgttgtatcttatgtccaagtattttaatgaaggaatgcaaagaacaacctccgggaatgttcctgagaattggttgttactgatgt |
46642757 |
T |
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| Q |
424 |
c |
424 |
Q |
| |
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| T |
46642756 |
c |
46642756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 424
Target Start/End: Complemental strand, 46640495 - 46640464
Alignment:
| Q |
393 |
aatgttcctgagaattggttgttactgatgtc |
424 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46640495 |
aatgttcctgagaattggttgttactgatgtc |
46640464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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