View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_11 (Length: 393)
Name: NF10290_low_11
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 42164333 - 42164701
Alignment:
| Q |
12 |
ataggcaagcaaaaggaattgagaaaagtaataaagtaatgaataaatcaaatatctcaaactgnnnnnnnggagttcgattttttaaaccaaaatcttc |
111 |
Q |
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| T |
42164333 |
atagacaagcaaaaggaattgagaaaagtaataaagtaatgaataaatcaaatatctcaaacttaaaaaaaggagttcgactttttaaaccaaaatcttc |
42164432 |
T |
|
| Q |
112 |
aatcaatgtagtcatcctataattttttgttgttgtaaatatcaagtattacctctctcacaattattttttaatgacaaatattagtagttaattgttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42164433 |
aatcaatgtagtcatcctataattttttgttgttgtaaatatcaagtatcacctctctcacaattattttttaatgacaaatattagtagtttattgttt |
42164532 |
T |
|
| Q |
212 |
tgttgtgttagtcttttctctttgtcggaatttaaaccttgaacctccacttcttaacccttataatgtcttaatatattttctagtcatttttccaatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
42164533 |
tgttgtgttagtcttttctctttgtcggaatttaaaccttggacctccacttcttaactcttataatgtcttaatatatttgctagtcatttttccaatt |
42164632 |
T |
|
| Q |
312 |
taagcctaggcgcaaaagatttgcgtccaatcgcaatagatttgtatgaagtgttttggagttgttgtt |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42164633 |
taagcctaggcgcaaaagatttgcgtccaatcgcaatagatttgtatgaagtgttttggagttgttgtt |
42164701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 16632949 - 16632981
Alignment:
| Q |
178 |
ttttttaatgacaaatattagtagttaattgtt |
210 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
16632949 |
ttttttaatggcaaatattagtagttaattgtt |
16632981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 3294509 - 3294541
Alignment:
| Q |
178 |
ttttttaatgacaaatattagtagttaattgtt |
210 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
3294509 |
ttttttaatgacaaatattagtaattaattgtt |
3294541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 13039975 - 13040007
Alignment:
| Q |
178 |
ttttttaatgacaaatattagtagttaattgtt |
210 |
Q |
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|||||||||||||||||||| |||||||||||| |
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|
| T |
13039975 |
ttttttaatgacaaatattaatagttaattgtt |
13040007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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