View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_12 (Length: 370)
Name: NF10290_low_12
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 48714654 - 48714824
Alignment:
| Q |
20 |
acgtgagctttgtctcctagttgaatcacaaaatttgcttccattgttgttattggtcccatgatggcatgcacttcctcattttttatgagatccaaag |
119 |
Q |
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| T |
48714654 |
acgtgagctttgtctcctagttgaatcacgaaatttgtttctattgttgttattggccccattatggcttgcactttttcatttttaatgagatccaaag |
48714753 |
T |
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| Q |
120 |
ctgttcatcacaaatttaatgattatgtattctaattgaatcatccgtattttgtcatctttattatctat |
190 |
Q |
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| T |
48714754 |
ctgttcatcacaaatttaatgattatgtattctaattgaatcatccgtattttgtcatctttattatctat |
48714824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 48702548 - 48702665
Alignment:
| Q |
20 |
acgtgagctttgtctcctagttgaatcacaaaatttgcttccattgttgttattggtcccatgatggcatgcacttcctcattttttatgagatccaaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702548 |
acgtgagctttgtctcctagttgaatcacaaaatttgcttccattgttgttattggtcccatgatggcatgcacttcctcattttttatgagatccaaag |
48702647 |
T |
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| Q |
120 |
ctgttcatcacaaattta |
137 |
Q |
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| T |
48702648 |
ctgttcatcacaaattta |
48702665 |
T |
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