View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10290_low_14 (Length: 355)

Name: NF10290_low_14
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10290_low_14
NF10290_low_14
[»] chr1 (1 HSPs)
chr1 (65-355)||(45104665-45104955)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 65 - 355
Target Start/End: Complemental strand, 45104955 - 45104665
Alignment:
Q  65 tgtgccagtggaacttataactcgtcgaagatcagccctaaagagaagcaagggaatggcgagaggaagaagaaacttcagaaccaagtcataagcagga 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45104955 tgtgccagtggaacttataactcgtcgaagatcagccctaaagagaagcaagggaatggcgagaggaagaagaaacttcagaaccaagtcataagcagga 45104856  T
Q  165 gcattaacagaaagaatccccaaattactagcagcaagacacaccaaaatactcacaatagctccactcactgttttcccaatctccgtcttctccgacc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45104855 gcattaacagaaagaatccccaaattactagcagcaagacacaccaaaatactcacaatagctccactcactgttttcccaatctccgtcttctccgacc 45104756  T
Q  265 agattccgaaagccgcagctgcgaataaagccgtccagtttccccattcgtcgttgggagaaatcagagggacattcaagttcaacttccc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45104755 agattccgaaagccgcagctgcgaataaagccgtccagtttccccattcgtcgttgggagaaatcagagggaaattcaagttcaacttccc 45104665  T

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