View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_15 (Length: 333)
Name: NF10290_low_15
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 3649597 - 3649907
Alignment:
| Q |
17 |
gttagttgaccaagtcaattatcggtttcatgttcaatttattatgatggctataaattaaacatggtctcaaattgtagtcaacatcata----gttgt |
112 |
Q |
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| T |
3649597 |
gttagttgaccaagtcaattatcggtttcatgttcaatttattatgatggctataaattaaacatggtctcaaattgtagtcaacatcatatatagttgt |
3649696 |
T |
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| Q |
113 |
gcccacaatat--tgttgttgtggtagcctccacaaaaatattgtactacaatagttgtgtgattttcaatcacgtctacgatcgcatcgcaatcataca |
210 |
Q |
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| T |
3649697 |
ggccacaatatattgttgttgtggtagcctccacaaaaatattgtaccacaatagttgtgtgattttcaatcacgtctacgatcgcatcgcaatcataca |
3649796 |
T |
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| Q |
211 |
agaaaccacatcagttcctacgatgtccattcaaatattctcaccaaaaattaaaactttagaaccacaaatacgaatcttctttagatataatgaccaa |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3649797 |
agaaaccgcatcagttcctacgatgtccattcaaatattctcaccaaaaattaaaactttagaaccacaaatacgaatcttctttagatataatgaacaa |
3649896 |
T |
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| Q |
311 |
tcttaccttca |
321 |
Q |
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| T |
3649897 |
tcttaccttca |
3649907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 38750928 - 38750844
Alignment:
| Q |
116 |
cacaatattgttgttgtggtagcctccacaaaaatattgtactacaatagttgtgtgattttcaatcacgtctacgatcgcatcg |
200 |
Q |
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| T |
38750928 |
cacaatattgttgttgtgttagactccacaatgacattgcaccacaatagcattgtgatcttcaatcacgtgtatggtcgcatcg |
38750844 |
T |
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