View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_17 (Length: 333)
Name: NF10290_low_17
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 135 - 324
Target Start/End: Original strand, 27986277 - 27986465
Alignment:
| Q |
135 |
taaaataactcacaattactcttttctatacgacattaccttatattaattcttcatcttgcgtatttgctagaatgaaatataaagtggaacggagaaa |
234 |
Q |
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| T |
27986277 |
taaaataactcacaattactcttttctataagacattaccttacattaattcttcatcatgcgtatttgcaagaatgaaatataaagtggaacggagaaa |
27986376 |
T |
|
| Q |
235 |
gtaattcgttggttcttccccataataacttgactaaatttatgtgatctttatttcgttgttactaatattattcagttgttttcatct |
324 |
Q |
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| T |
27986377 |
gtaattcgtt-gttcttctccataataacttgactaaatttatgtgatctttatttcgttgttactaatattattcagttgttttcatct |
27986465 |
T |
|
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 40439763 - 40439725
Alignment:
| Q |
134 |
gtaaaataactcacaattactcttttctatacgacatta |
172 |
Q |
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|||||| ||||||||||||||||||||||||| |||||| |
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| T |
40439763 |
gtaaaacaactcacaattactcttttctatacaacatta |
40439725 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 858349 - 858387
Alignment:
| Q |
134 |
gtaaaataactcacaattactcttttctatacgacatta |
172 |
Q |
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| T |
858349 |
gtaaaataactcacaatcactcttttctatacaacatta |
858387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 41954593 - 41954555
Alignment:
| Q |
134 |
gtaaaataactcacaattactcttttctatacgacatta |
172 |
Q |
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|||||||||||||||||||||| ||||||||| |||||| |
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| T |
41954593 |
gtaaaataactcacaattactcctttctatacaacatta |
41954555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 1214783 - 1214745
Alignment:
| Q |
134 |
gtaaaataactcacaattactcttttctatacgacatta |
172 |
Q |
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|||||||||||||||||||||| ||||||||| |||||| |
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| T |
1214783 |
gtaaaataactcacaattactcctttctatacaacatta |
1214745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 11842171 - 11842208
Alignment:
| Q |
135 |
taaaataactcacaattactcttttctatacgacatta |
172 |
Q |
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||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
11842171 |
taaaacaactcacaattactcttttctatacaacatta |
11842208 |
T |
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