View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10290_low_2 (Length: 657)

Name: NF10290_low_2
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10290_low_2
NF10290_low_2
[»] chr2 (6 HSPs)
chr2 (2-639)||(3219712-3220345)
chr2 (61-438)||(15985303-15985677)
chr2 (2-57)||(12504720-12504775)
chr2 (2-57)||(14681151-14681206)
chr2 (580-617)||(15985932-15985969)
chr2 (463-522)||(15985680-15985738)
[»] chr8 (5 HSPs)
chr8 (240-366)||(23729106-23729232)
chr8 (2-57)||(23929199-23929254)
chr8 (2-57)||(44197897-44197952)
chr8 (2-52)||(20793444-20793494)
chr8 (95-192)||(23729278-23729375)
[»] scaffold0014 (2 HSPs)
scaffold0014 (2-57)||(143719-143774)
scaffold0014 (2-57)||(173513-173568)
[»] chr7 (2 HSPs)
chr7 (2-57)||(48513666-48513721)
chr7 (2-57)||(48728108-48728163)
[»] chr6 (1 HSPs)
chr6 (2-57)||(29651774-29651829)
[»] chr5 (2 HSPs)
chr5 (2-57)||(36662526-36662581)
chr5 (2-57)||(36679197-36679252)
[»] chr3 (3 HSPs)
chr3 (2-57)||(38327925-38327980)
chr3 (2-57)||(46073352-46073407)
chr3 (2-57)||(55488644-55488699)
[»] chr1 (3 HSPs)
chr1 (2-57)||(52609244-52609299)
chr1 (2-52)||(29886958-29887008)
chr1 (2-52)||(52887707-52887757)


Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 2 - 639
Target Start/End: Complemental strand, 3220345 - 3219712
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagcttttaacaaatcacttgtcaagactgttactgactgagcccgcaatag 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||||||  |||||||    
T  3220345 cattgaaggtagttcatatcatcaagcttaacataaactactcgttt--agcttttaacaaatcacttgtcaatactgtgactgactgagctggcaatag 3220248  T
Q  102 tctcacttaggacaggacttgcttacttgagagattgaccttgattactacttaaaaagaacaaagcagaggagttatcaggttcatgatatgatgcaca 201  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3220247 tctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagttatcaggttcatgatatgatgcaca 3220148  T
Q  202 tctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220147 tctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaat 3220048  T
Q  302 attttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgcacggatataattttgttgc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220047 attttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgcacggatataattttgttgc 3219948  T
Q  402 agaaagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgcagaaagagccattggaaagccgcaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219947 agaaagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgcagaaagagccattggaaagccgcaa 3219848  T
Q  502 gtggggggaaatgatgatattgcaaaaagtttagaattttttacatgagctttactgcagcgctatctgaccactatcagtagtgctactctaaacttca 601  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219847 gtggggggaaatgatgatattgcaaaaagtttagaa--ttttacatgagctttactgcagcgctatctgaccactatcagtagtgctactctaaacttca 3219750  T
Q  602 atgcaaaatggggtttcgtcgtgtcgcacccatgagcc 639  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3219749 atgcaaaatggggtttcgtcgtgtcgcacccatgagcc 3219712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 61 - 438
Target Start/End: Original strand, 15985303 - 15985677
Alignment:
Q  61 aaatcacttgtcaagactgttactgactgagcccgcaatagtctcacttaggacaggacttgcttacttgagagattgacctt-gattactacttaaaaa 159  Q
    |||||||||||||| |||||    | ||||||  ||||| ||| ||||||||||| |||||||||| ||||| |||  ||||| ||||||||||| || |    
T  15985303 aaatcacttgtcaatactgt----ggctgagctggcaatcgtcacacttaggacaagacttgcttatttgagggatcaacctttgattactacttcaaga 15985398  T
Q  160 gaacaaagcagaggagttatcaggttcatgatatgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtgg 259  Q
    |  |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  15985399 gttcaaatcagaggagttatcaggtgcatgatatgatgcacatctacatctgatggtttttccagtacacacaagatagaccatgcaaagttgaaagtgg 15985498  T
Q  260 ataaaataggagaacccaaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatat 359  Q
     | |||| |||||||| ||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||||| | ||||||| |||||    
T  15985499 gtcaaattggagaacctaaactccgatcatgaatcgatgaatattttataggtagtccatacaaggaaaacaacatgcgaagggcgccgctgctcaatat 15985598  T
Q  360 ccttgactaaatagctctgatgcacggatataattttgttgcagaaagggccgctggaaagccgcaaggtgaggatggc 438  Q
    | ||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  15985599 ctttgactaaatagctctgatgcacggatagcattttgttgtagaaagggctgctggaaagccacaaggtgaggatggc 15985677  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 12504775 - 12504720
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  12504775 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 12504720  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 14681151 - 14681206
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  14681151 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 14681206  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 15985932 - 15985969
Alignment:
Q  580 agtagtgctactctaaacttcaatgcaaaatggggttt 617  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15985932 agtagcgctactctaaacttcaatgcaaaatggggttt 15985969  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 522
Target Start/End: Original strand, 15985680 - 15985738
Alignment:
Q  463 cctggaaaggttgcagaaagagccattggaaagccgcaagtggggggaaatgatgatatt 522  Q
    ||| |||||||||||||||| |||| ||||||||||||||  |||||||| |||||||||    
T  15985680 ccttgaaaggttgcagaaagggccaatggaaagccgcaag-agggggaaacgatgatatt 15985738  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 23729232 - 23729106
Alignment:
Q  240 ccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaa 339  Q
    ||||||||||| |||||||| |  | | ||||||||| ||||||||||||||||| |||| || ||| ||||||  | | |||||| |||||||||||||    
T  23729232 ccatgcaaagtggaaagtgggtgtagtgggagaaccctaaatctgatcacgaatcaatgagtactttgtaggtaacccacacaaggcaaacaacatgaaa 23729133  T
Q  340 agggtgtcgctgcttaatatccttgac 366  Q
    ||||  | |||||| ||| ||||||||    
T  23729132 agggcattgctgctcaatttccttgac 23729106  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 23929199 - 23929254
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  23929199 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 23929254  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 44197952 - 44197897
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  44197952 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 44197897  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 20793494 - 20793444
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaag 52  Q
    |||||||||| |||  ||||||||||||||||| |||||||| ||||||||    
T  20793494 cattgaaggtagtttgtatcatcaagcttaacagaaactacttgtttgaag 20793444  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 23729375 - 23729278
Alignment:
Q  95 gcaatagtctcacttaggacaggacttgcttacttgagagattgaccttgattactacttaaaaagaacaaagcagaggagttatcaggttcatgata 192  Q
    ||||||||| |||||||||||| ||||||||| |||||||||  || ||| |||| |||  || ||| ||| ||| |||||| | ||||| |||||||    
T  23729375 gcaatagtcacacttaggacagaacttgcttatttgagagatcaacattggttaccactgtaagagaccaaggcataggagtcaccaggtgcatgata 23729278  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 143774 - 143719
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  143774 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 143719  T

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Target: scaffold0014; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 173568 - 173513
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  173568 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 173513  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 48513666 - 48513721
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48513666 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48513721  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 48728108 - 48728163
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48728108 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48728163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 29651829 - 29651774
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  29651829 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 29651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 36662581 - 36662526
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36662581 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36662526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 36679197 - 36679252
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36679197 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36679252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 38327925 - 38327980
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  38327925 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 38327980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 46073407 - 46073352
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  46073407 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 46073352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 55488699 - 55488644
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||| | |||||||| |||||||| ||||    
T  55488699 cattgaaggtagttcgtatcatcaagcttaatagaaactacttgtttgaaggtttt 55488644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 52609244 - 52609299
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaagctttt 57  Q
    |||||||||| |||| ||||||||||||||||| |||||||| |||||||| ||||    
T  52609244 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 52609299  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 29887008 - 29886958
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaag 52  Q
    |||||||||| |||| ||||||||||||||||| |||||||| ||||||||    
T  29887008 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 29886958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 52887757 - 52887707
Alignment:
Q  2 cattgaaggtggttcatatcatcaagcttaacataaactactcgtttgaag 52  Q
    |||||||||| |||| ||||||||||||||||| |||||||| ||||||||    
T  52887757 cattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 52887707  T

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