View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_20 (Length: 309)
Name: NF10290_low_20
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 11023058 - 11022777
Alignment:
| Q |
19 |
gatagtgatttaacaaacctgccataatgaagctttctcagcccagaacttagaaccaccagaaaactcagaatcaaacccattaggaagatgctgatta |
118 |
Q |
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| T |
11023058 |
gatagtgatttaacaaacctgccataatgaagctttctcagcccagaacttagaaccaccagaaaactcagaatcaaacccattaggaagatgctgatta |
11022959 |
T |
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| Q |
119 |
tgctgctgctgttgttgttgttg---atagataacatcaacttcctcagcagtgttccccaccatatcttccctactcccgcacccacccaatccctcct |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11022958 |
tgctgctgctgttgttgttgttgttgatagataacatcaacttcctcagcagtgttccccaccatatcttccctactcccgcacccacccaatccctcct |
11022859 |
T |
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| Q |
216 |
cctcttgaaaccttctcgaaataaacccaatcatctcatctctctcaacaacctcacgttcaagatcctccacacgcgcctt |
297 |
Q |
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| T |
11022858 |
cctcttgaaaccttctcgaaataaacccaatcatctcatctctctcaacaacctcacgctcaagatcctccacacgcgcctt |
11022777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 31500510 - 31500585
Alignment:
| Q |
191 |
ctcccgcacccacccaatccctcctcctcttgaaaccttctcgaaataaacccaatcatctcatctctctcaacaa |
266 |
Q |
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|||| ||| ||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||| || ||||||| |
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| T |
31500510 |
ctcctgcaaccacccaatccggcctcctcttgaaacctgctcgaaataaactcaatcatgtcatccctttcaacaa |
31500585 |
T |
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