View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_21 (Length: 303)
Name: NF10290_low_21
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_21 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 39 - 296
Target Start/End: Complemental strand, 8717215 - 8716955
Alignment:
| Q |
39 |
cctgaagcaatgcaattcaaacct---tacacggtaaaaacttcacatccgatgtcagcaacaaactgaacaaatcaatcacaaggaaataatttacttg |
135 |
Q |
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| T |
8717215 |
cctgaagcaatgcaattcaaacctccttacacggtaaaaacttcacatccgaagtcatcaacaaactgaacaaatcaaccacaaggaaataatttacttg |
8717116 |
T |
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| Q |
136 |
cttcaaaagcatctgaaaacatgaagtggattcgtccacctatttgagaagacaaagttcttgtttctacccgccctataaataaaccaggaccatgaca |
235 |
Q |
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| T |
8717115 |
cttcaaaagcatcgtaaaacatgaagtggatttgtccacctatttgagaagacaaagttcttgtttctacccgccctataaataaaccaagaccatgaca |
8717016 |
T |
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| Q |
236 |
acagcttaattcgaccaaccatctcatgaacattgacatctttctcgttaaaaagaatatc |
296 |
Q |
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| T |
8717015 |
acagcttaattcgaccaaccatctcatgaacattgacatctttcccgttaaaaagaatatc |
8716955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 94 - 296
Target Start/End: Complemental strand, 8736016 - 8735815
Alignment:
| Q |
94 |
caacaaactgaacaaatcaatcacaaggaaataatttacttgcttcaaaagcatctgaaaacatgaagtggattcgtccacctatttgagaagacaaagt |
193 |
Q |
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| T |
8736016 |
caacaaactgaacaaatcaacaacacagaaacaatt-acttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagt |
8735918 |
T |
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| Q |
194 |
tcttgtttctacccgccctataaataaaccaggaccatgacaacagcttaattcgaccaaccatctcatgaacattgacatctttctcgttaaaaagaat |
293 |
Q |
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| T |
8735917 |
tcttgtttctactctccctataaataaaccaagaccacgacaacagcttaattcgatcaaccatctcatgaacattggcagctttcccgttgaaatgaat |
8735818 |
T |
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| Q |
294 |
atc |
296 |
Q |
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| T |
8735817 |
atc |
8735815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 72059 - 71984
Alignment:
| Q |
162 |
tggattcgtccacctatttgagaagacaaagttcttgtttctacccgccctataaataaaccaggaccatgacaac |
237 |
Q |
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| T |
72059 |
tggattcgtccacgtatttgagaagacaagattcttatttctaccgtctctgataataaaccaagaccatgacaac |
71984 |
T |
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