View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_3 (Length: 580)
Name: NF10290_low_3
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 17461318 - 17461155
Alignment:
| Q |
1 |
tcagaaattctactgaaatagtatagcatatatgattttggattctcagaaagggataacatctataattaatctgtatgctttatttgctactatttta |
100 |
Q |
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| T |
17461318 |
tcagaaattctactgaaatagta--gcatatatgattatggactctcagaaagggataacatctataattaatcagtatgctttatttgctactatttta |
17461221 |
T |
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| Q |
101 |
ccattaatgctattgttgtaatgatattagtcttcaactagtttgtcaaagacatgtattaagata |
166 |
Q |
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| T |
17461220 |
ccattaatgctgttgtcgtaatgatattagtattcaactagtttgtcaaagacatgtattaagata |
17461155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 292 - 493
Target Start/End: Original strand, 17455853 - 17456051
Alignment:
| Q |
292 |
ctctctctcctattatgaactgaaaagcagggaatgaagcgtgtgtgtagccattgattacctgtaggaagtcatgacttcaggatctcttaaaagcctt |
391 |
Q |
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| T |
17455853 |
ctctctctcctgttatgaactgaaaa--agggaatgaagtatgcgcgtggtcattgattacctgtag-aagtcatgatttcaggatctcttaaaagccgt |
17455949 |
T |
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| Q |
392 |
tttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttat |
491 |
Q |
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| T |
17455950 |
tgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttat |
17456049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 348 - 511
Target Start/End: Original strand, 17805256 - 17805419
Alignment:
| Q |
348 |
attacctgtaggaagtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagc |
447 |
Q |
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| T |
17805256 |
attacctataggaagtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaac |
17805355 |
T |
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| Q |
448 |
tgctaagggtaccagaaacatccatgtccaaatataggatttatcttcaacataaggccatgta |
511 |
Q |
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| T |
17805356 |
tactaagggaaccagaaacagccatgtacatagataggatttatcttcaatataaggccatgta |
17805419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 17455746 - 17455801
Alignment:
| Q |
207 |
ttatatacaagtcatttttacggtgagtataaagacggataatatagtacctatct |
262 |
Q |
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| T |
17455746 |
ttatatacaagtcatttttacggtgagtataaagacaaataatatagtacctatct |
17455801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 348 - 511
Target Start/End: Complemental strand, 52142729 - 52142566
Alignment:
| Q |
348 |
attacctgtaggaagtcatgacttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagc |
447 |
Q |
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| T |
52142729 |
attacctgtaggatgtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagc |
52142630 |
T |
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| Q |
448 |
tgctaagggtaccagaaacatccatgtccaaatataggatttatcttcaacataaggccatgta |
511 |
Q |
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| T |
52142629 |
tactaagggaaccagaaacagccatgtccaaagataggatttatcttcaacataaggccatgta |
52142566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 52142534 - 52142498
Alignment:
| Q |
516 |
cttcaaaggtagcaggattccaccacctaatggtaaa |
552 |
Q |
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| T |
52142534 |
cttcaaaagtagcaggattccaccatctaatggtaaa |
52142498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 268 - 468
Target Start/End: Original strand, 775279 - 775479
Alignment:
| Q |
268 |
tctcgactctatctattgtcgtccctctctctcctattatgaactgaaaagcagggaatgaagcgtgtgtgtagccattgattacctgtaggaagtcatg |
367 |
Q |
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| T |
775279 |
tctcgactctatctattgtcgtccctcttcctactattatgaactcaaaaaaagggaaggaaatatgtatgcgatagttgattacctataggaagtcatg |
775378 |
T |
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| Q |
368 |
acttcaggatctcttaaaagcctttttcggcacaatacattgacaacgaggaggtatggaagctgccacaaaacgtaagctgctaagggtaccagaaaca |
467 |
Q |
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| T |
775379 |
acttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgtaagctgctaagggtaccagaaaca |
775478 |
T |
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| Q |
468 |
t |
468 |
Q |
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| T |
775479 |
t |
775479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 774985 - 775177
Alignment:
| Q |
1 |
tcagaaattctactgaaatagtatagcatatatgatttt--ggattctcagaaagggataacatctataattaatctgtatgctttatttgctactattt |
98 |
Q |
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| T |
774985 |
tcagaaattctattgaaatagta--gcagatatgattttatggactctcagggaggggtaacatcaataattaatcaatatgttttctttgctactattt |
775082 |
T |
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| Q |
99 |
taccattaatgctattgttgtaatgatattagtcttcaactagtttgtcaaagacatgtattaagatagaccatattcaagtt-acttaaatgagactaa |
197 |
Q |
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| T |
775083 |
taccat--------------taatgatattaatattctactagtttgtcaatgaaatgtatcaagacagaccatatttaagttaactaaaatgagactaa |
775168 |
T |
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