View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_31 (Length: 248)
Name: NF10290_low_31
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 520032 - 519809
Alignment:
| Q |
4 |
caagggtagtttaggcatgcgaaatccacccnnnnnnncaacagaaaggaaaagtacctggaaatttaaatcaacaaagacattacaaaagcgagtaatg |
103 |
Q |
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| T |
520032 |
caagggtagtttaggcatgcgaaatccacccaaaaaaacaacagaaaggaaaagtacctggaaattcaaatcaacaaagacattacaaaagcgagtaatg |
519933 |
T |
|
| Q |
104 |
tctttcatattattggtgttaatttcagcgagtaaattctctgcaaactctccaagggggtcaggttgagcatttttgtagtctaaagaggtgaagcaca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
519932 |
tctttcatattattggtgttaatttcagcgagtaaattctccgcaaactctcgaagggggtcaggttgagcatttttgtagtctaaagaggtgaaccaca |
519833 |
T |
|
| Q |
204 |
caccgtcctgaaaaatacagccat |
227 |
Q |
| |
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||||||| |||||||||||||||| |
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| T |
519832 |
caccgtcgtgaaaaatacagccat |
519809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 366524 - 366747
Alignment:
| Q |
4 |
caagggtagtttaggcatgcgaaatccacccnnnnnnncaacagaaaggaaaagtacctggaaatttaaatcaacaaagacattacaaaagcgagtaatg |
103 |
Q |
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||||||| |||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
366524 |
caagggtggtttaggcatacaaaatccacccaaaaaaacaacagaaaggaaaagtacctggaaattcaaatcaacaaagacattacaaaagcgagtaatg |
366623 |
T |
|
| Q |
104 |
tctttcatattattggtgttaatttcagcgagtaaattctctgcaaactctccaagggggtcaggttgagcatttttgtagtctaaagaggtgaagcaca |
203 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
366624 |
tctttcatagtattggtgttaatttcaacgagtaaattctcagcaaactctcgaagggggtcaggttgagcatttttgtagtctaaagaggtgaaccaca |
366723 |
T |
|
| Q |
204 |
caccgtcctgaaaaatacagccat |
227 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
366724 |
caccgtcctgaaaaatacagccat |
366747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 529698 - 529530
Alignment:
| Q |
50 |
aggaaaagtacctggaaatttaaatcaacaaagacattacaaaagcgagtaatgtctttcatattattggtgttaatttcagcgagtaaattctctgcaa |
149 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
529698 |
aggaaaagtacctggaaatccaaatcaacatagacattacaaaagcgggtaatgtcttccatattattggtgttaatttcagcgactaaattctcagcaa |
529599 |
T |
|
| Q |
150 |
actctccaagggggtcaggttgagcatttttgtagtctaaagaggtgaagcacacaccgtcctgaaaaa |
218 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
529598 |
actcccgaagggggtcaggttgagcatttttgtagtctaaagaggtgaaccacacaccgtcctgaaaaa |
529530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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