View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_33 (Length: 239)
Name: NF10290_low_33
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 40421 - 40234
Alignment:
| Q |
17 |
acaactgacaggaatcgaatggataatttcgaacatgtaactttacaaccaagccacacaaaatatgatgaattccgtgcttccacgtcgggtagggtcg |
116 |
Q |
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| T |
40421 |
acaactgacaggaatcgaatggataatttcgaacatgtaactttacaaccaagccacacaaaatatgatgaattccgtgcttccacgtcgggtagggtcg |
40322 |
T |
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| Q |
117 |
ggagtgnnnnnnnnnnnnnnnnnnnnnnaaattcattcgttaaaagagtggttcaaatacaataagtactaggagcaccacaatgcta |
204 |
Q |
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| T |
40321 |
ggagtgtttattttttcatttcatttttaaattcattcgttaaaagagtggttcaaatacaataagtactgagagcaccgcaatgcta |
40234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 40212 - 40180
Alignment:
| Q |
203 |
tataacatttcatttcgttttatttagattcaa |
235 |
Q |
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| T |
40212 |
tataacatttcatttcgttttatttagattcaa |
40180 |
T |
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