View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_34 (Length: 235)
Name: NF10290_low_34
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 2069984 - 2070183
Alignment:
| Q |
9 |
gagtgagatgaacacatccttcnnnnnnnntataacaagattaatgttagagaaaactttgacagttaacagagaatcaaattcaattattcccttgttt |
108 |
Q |
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| T |
2069984 |
gagtgagatgaacacatccttcaaaaaaaatataacaagatt-----tagagaaaactttgacagttaacagagaatcaaattcaattattcccttgttt |
2070078 |
T |
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| Q |
109 |
gatgagtttgtatcgaagtatgcaaagtcgcttgtagaagaattgcagcgcagctttttcccc-tcctcacaggcgccgccaccagccccttcaaaccaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
2070079 |
gatgagtttgtatcgaagtatgcaaagtcgcttgtagaagaattgcagcgcagctttttccccttcctcacaagcgccgccaccagccccttcaatccaa |
2070178 |
T |
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Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 2074330 - 2074529
Alignment:
| Q |
9 |
gagtgagatgaacacatccttcnnnnnnnntataacaagattaatgttagagaaaactttgacagttaacagagaatcaaattcaattattcccttgttt |
108 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2074330 |
gagtgagatgaacacatccttcaaaaaaaatataacaagatt-----tagagaaaactttgacagttaacagagaatcaaattcaattattcccttattt |
2074424 |
T |
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| Q |
109 |
gatgagtttgtatcgaagtatgcaaagtcgcttgtagaagaattgcagcgcagctttttcccc-tcctcacaggcgccgccaccagccccttcaaaccaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
2074425 |
gatgagtttgtatcgaagtatgcaaagtcgcttgtagaagaattgcagcgcagctttttccccttcctcaccagcgccgccaccagccccttcaatccaa |
2074524 |
T |
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