View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_35 (Length: 222)
Name: NF10290_low_35
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 8716947 - 8716736
Alignment:
| Q |
1 |
tacgtttccaaccaaatacaccaaacagttgttagaaaaattagatgagacgcttttttacccttctttcctttacaaagcgaaataaacagcatgaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8716947 |
tacgtttccaaccaaatacaccaaacagttgttagaaaatttagatgagacgcttttttaccattctttcctttacaaagcgaaataaacagcatgaagt |
8716848 |
T |
|
| Q |
101 |
tatcaattaatgcattgctccattccactgctttccaatctagccatctaaaaattaactcccatattttgagtctttctgcaattcacgaacaaatgac |
200 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8716847 |
tatcaattaatgcatttctccattcgactgctttccaatctagccatctaaaaattaaatcccatattttgagtctttctgcaattcacgaacaaatgac |
8716748 |
T |
|
| Q |
201 |
ttgctgtctctg |
212 |
Q |
| |
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|| ||||||||| |
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|
| T |
8716747 |
ttactgtctctg |
8716736 |
T |
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