View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10290_low_38 (Length: 202)

Name: NF10290_low_38
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10290_low_38
NF10290_low_38
[»] chr3 (2 HSPs)
chr3 (103-184)||(3851459-3851540)
chr3 (14-64)||(3851579-3851629)
[»] chr8 (1 HSPs)
chr8 (103-169)||(14917390-14917456)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 3851540 - 3851459
Alignment:
Q  103 ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacaggtcaaga 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3851540 ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacaggtcaaga 3851459  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 3851629 - 3851579
Alignment:
Q  14 gatgaaaagtgagataaacatgcttggtgttaacaaccatgtgatgaaggg 64  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  3851629 gatgaaaagtgagataaacatgcttggtgttaacaatcatgttatgaaggg 3851579  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 14917390 - 14917456
Alignment:
Q  103 ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaaga 169  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||||| ||||| || ||||||||    
T  14917390 ttacatatatttcaagtccagtgaaagtgaagactaatgcttcaaatttcagagccctagtgcaaga 14917456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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