View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_5 (Length: 510)
Name: NF10290_low_5
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 34426304 - 34425823
Alignment:
| Q |
18 |
gaaaggagtattgcacctttgataagagacaaaattcttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcgtaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34426304 |
gaaaggagtattgcacctttgataagagacaaaattcttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcggaca |
34426205 |
T |
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| Q |
118 |
ttttgtatttttacgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcag |
217 |
Q |
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| T |
34426204 |
ttttgtatttttccgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcag |
34426105 |
T |
|
| Q |
218 |
gcgatggttataaggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactgatctgaagaatttacctgttgg |
317 |
Q |
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| T |
34426104 |
gtgatggttataaggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactgatctgaagaatatacctgttgg |
34426005 |
T |
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| Q |
318 |
aaagttcgggtcaaatgggaagaatgacagaagagttaaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426004 |
aaagttcgggtcaaatgggaagaatgacagaagagttaaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttacc |
34425905 |
T |
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| Q |
418 |
attttcagctgctagtttatttcaatattttttagactt-aaagtattatagaataacagaatatccctacttgtttcccta |
498 |
Q |
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| T |
34425904 |
attttcagctgctagtttatttcaatattttttagacttaaaagtattatagaataacaaaatatccctacttgtttcccta |
34425823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 34419059 - 34418880
Alignment:
| Q |
114 |
tacattttgtatttttacgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatt |
213 |
Q |
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||||||||||||||| || ||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34419059 |
tacattttgtattttgacttaacataaactactgctttcctggac---taacaacatatcaattattatgttactcattcagttggttttgtcttgcatt |
34418963 |
T |
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| Q |
214 |
tcaggcgatggttataaggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactga |
296 |
Q |
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| T |
34418962 |
tcaggtgttggttatgaagtattagtggacatgctaaaatatattggtcccactcatgttgttaagatagacttatccactga |
34418880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34419191 - 34419099
Alignment:
| Q |
19 |
aaaggagtattgcacctttgataagagacaaaattcttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagct |
111 |
Q |
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|||| ||||| |||||||||||||| || ||||| ||||||| ||||| ||||||| |||||||||| |||||||||||||||||| |||| |
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| T |
34419191 |
aaagaagtatcgcacctttgataagcgaaaaaatgcttctaaaattcagacgcctcttatagtgaatacttctggctgggttaaaggtgagct |
34419099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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