View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_6 (Length: 480)
Name: NF10290_low_6
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 372
Target Start/End: Complemental strand, 43062553 - 43062205
Alignment:
| Q |
24 |
aggaaggactataataacgcattaactactataactgatgtcatatttcataacggttacataacttcggctcagactcttttggataaatggtcttttt |
123 |
Q |
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| T |
43062553 |
aggaaggactataataacgcattaactactataactgatgtcatatttcataacggttacataacttcggctcagactcttttggataaatggtcttttt |
43062454 |
T |
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| Q |
124 |
cctagcataattttgatagttaataacctatgcccgaatacagaaaccaaatagcagattgtaacgtaaagaagttaagacaacattatgcaatacagag |
223 |
Q |
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| T |
43062453 |
cctagcaaaattttgatagttaataacctatgcccgaatacagaaaccaaatagcagattgtaacgtaaagaagttaagacaacattatgcaatacagag |
43062354 |
T |
|
| Q |
224 |
gtcagtaatacgaatcagtgacaaaaaacattggaaatcggaactagattttatgaaaaaacagatcaacatatcaaagcaatatggaaggttgcatgac |
323 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062353 |
gtcaataatacgaatcagtgacaaaaaacattggaaatcggaactagattttatgaaaaaacagatcaacatatcaaagcaatatggaaggttgcatgac |
43062254 |
T |
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| Q |
324 |
tcctatgatcttttgggagctctgataccagtgtgttactacgtatttc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43062253 |
tcctatgatcttttgggagctctgataccagtgtgttgctacgtatttc |
43062205 |
T |
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