View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_7 (Length: 464)
Name: NF10290_low_7
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 198 - 459
Target Start/End: Original strand, 38701731 - 38701993
Alignment:
| Q |
198 |
acttgtggaaataagttgacattatcttttgaacaatgtcacgggcttttttcacaacttatttcatacatttgacctcacaataagtttgtctgaacca |
297 |
Q |
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| T |
38701731 |
acttgtggaaataagttgaaattatcttttgaacaatgtcacgggcttttttcacaacttatttcatacatttgacctcacaataagtttgtctgaacca |
38701830 |
T |
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| Q |
298 |
ttatcaataattttggaacaaatt-aaatccaagctaacaatttacacatgtgattcaaccattcttgaagagtttataaaaatacatatcaatatgatt |
396 |
Q |
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| T |
38701831 |
ttatcaataattttggaacgaatttaaatccaagctaacaatttacacatgtgattcaaccattcttgaagagtttataaaaatacatatcaatatgatt |
38701930 |
T |
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| Q |
397 |
gtgcttattagataaaaccctaagcagtgataagtttcttattcataaagtcactcacacact |
459 |
Q |
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| T |
38701931 |
gtgcttattagataaaaccctaagcagtgataagtttcttattcataaagtcactcacacact |
38701993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 38701514 - 38701704
Alignment:
| Q |
14 |
gaaggggaaagttatcaacaaatgaggtgaaattttaaaagagaatggaatcgtgggagagataaaaagtacgaggaaaatagagctaatgggatggatt |
113 |
Q |
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| T |
38701514 |
gaaggggaaagttatcaacaaatgaggtgaaattttaaaagagaatggaatcgtgggagagataaaaagtatgagggagatagagctaatgggttggatt |
38701613 |
T |
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| Q |
114 |
tggt-------ggccatgataagtttagtcacttgatctaatctagtgatggaaaaaattgatccatgatggaccaatactcccattggtc |
197 |
Q |
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| T |
38701614 |
tggtgctgctagaccatgataagtttagtcacttgatctaatctagtgatggaaaaaattggtccatgatggaccaatattcccattggtc |
38701704 |
T |
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