View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10290_low_8 (Length: 456)
Name: NF10290_low_8
Description: NF10290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10290_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 5501280 - 5501709
Alignment:
| Q |
18 |
atatatccactgcaagaataagaaattgcagtttttagtaaaaggagctgcaacatggcacagaactgaaggtttaaataagtaccgtaatttgtcccta |
117 |
Q |
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| T |
5501280 |
atatatccactgcaagaataagaaattgctgtttttagtaaaaggagctgcaacatggcacagaactgaaggtttaaataagtaccgtaatatgtcccta |
5501379 |
T |
|
| Q |
118 |
attaaaattcttatcagtaataatgcctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtccatgtatagtctctactctatgg |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5501380 |
attaaaattcttatcagtaataatacctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtccatgtatagtatctactctatgg |
5501479 |
T |
|
| Q |
218 |
actaatactccaatatgaacaattattatcaaagtctaaaaccgaaattataacgaggataaaaaattatctttcctctagtttaggaatacaaactgat |
317 |
Q |
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| T |
5501480 |
actaatactccaatatgaacaattattatcaaagtctaaaaccaaa---ataacgaggataaaagacaatctttcctgtattttaggaatacaaactgat |
5501576 |
T |
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| Q |
318 |
aaaaatctttaatagaaacgaaaactgaaatatatttcaaagactaaaaagtcatttaagctttaaaattgaaataaatataagttagatattactatga |
417 |
Q |
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| T |
5501577 |
aaaaatctttaatagaaacgaaaactgaaatatatttcaaagacgaaaaagtcatttaagccttaaaattgaaataaatataagttagatattactatga |
5501676 |
T |
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| Q |
418 |
tccgatcaatctatttgtattagcctatgcttc |
450 |
Q |
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| T |
5501677 |
tccgatcaatctatttgtattagcctctgcttc |
5501709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 43 - 348
Target Start/End: Original strand, 5488490 - 5488804
Alignment:
| Q |
43 |
ttgcagtttttagtaaaaggagctgcaacatggcacagaactgaaggtttaaataagtaccgtaattt------------gtccctaattaaaattctta |
130 |
Q |
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| T |
5488490 |
ttgcagtttttagtataaggagctgcaagatggcacagaactgaaggtttaaataagtaccgtaatttttttagtaattagtccctaaataaaattctta |
5488589 |
T |
|
| Q |
131 |
tcagtaataatgcctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtccatgtatagtctctactctatggactaatactccaa |
230 |
Q |
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| T |
5488590 |
tcggtaataatgcctaaaacatagaacacaatacttgtaatatttgttgatattggacatggtctatgtatagtgtccactctatggactaatactccaa |
5488689 |
T |
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| Q |
231 |
tatgaacaattattatcaaagtctaaaaccgaaattataacgaggataaaaaattatctttcctctagtttaggaatacaaactgataaaaatctttaat |
330 |
Q |
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| T |
5488690 |
tatgaacaattattatcaaagactaaaaccaaa---ataatgaggataaaaaacaatctttcctgtattttaggaatacaaactgatacaaatctttaat |
5488786 |
T |
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| Q |
331 |
agaaacgaaaactgaaat |
348 |
Q |
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| T |
5488787 |
agaaacgaaaactgaaat |
5488804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 5483178 - 5483327
Alignment:
| Q |
111 |
gtccctaattaaaattcttatcagtaataatgcctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtccatgtatagtctctac |
210 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || |
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| T |
5483178 |
gtccctaaataaaattcttatcggtaataatgcctaaagcatagaacacattgcttggaatatttgttgatattggacatagtctatgtatagtctatat |
5483277 |
T |
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| Q |
211 |
tctatggactaatactccaatatgaacaattattatcaaagtctaaaacc |
260 |
Q |
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| T |
5483278 |
tctatggactaatactccaatatgaaaaattattatcaaagactaaaacc |
5483327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 221 - 443
Target Start/End: Original strand, 5524344 - 5524566
Alignment:
| Q |
221 |
aatactccaatatgaacaattattatcaaagtctaaaaccgaaattataacgaggataaaaaattatctttcctctagtttaggaatacaaactgataaa |
320 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |||| || ||||| |||||| ||||||||| || ||||||||| |||||||||||| |
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| T |
5524344 |
aatactccaatatgaacaattattatcaaagattaaaacaaaaataat---gaggacaaaaaacaatctttcctgtattttaggaattcaaactgataaa |
5524440 |
T |
|
| Q |
321 |
aatctttaatagaaacgaaaactgaaa------tatatttcaaagactaaaaagtcatttaagctttaaaattgaaataaatataagttagatattacta |
414 |
Q |
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||||||| ||||||| |||||| |||| |||||| |||||| |||||| | |||||||| ||||| | ||||| || ||||||||||||||||| |
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| T |
5524441 |
aatcttttatagaaatgaaaaccgaaatcaatgtatattacaaagagtaaaaa-ttatttaagccttaaa--ttaaatatatgtaagttagatattacta |
5524537 |
T |
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| Q |
415 |
tgatccgatcaatctatttgtattagcct |
443 |
Q |
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|||||| |||| ||||||||||||||||| |
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| T |
5524538 |
tgatcccatcactctatttgtattagcct |
5524566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 5488794 - 5488862
Alignment:
| Q |
382 |
aaaattgaaataaatataagttagatattactatgatccgatcaatctatttgtattagcctatgcttc |
450 |
Q |
| |
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|||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5488794 |
aaaactgaaatcaatgtaagttagatattactatgatccgatcaatctatttgtattagcctctgcttc |
5488862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 5453317 - 5453390
Alignment:
| Q |
121 |
aaaattcttatcagtaataatgcctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtc |
194 |
Q |
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| T |
5453317 |
aaaattcttatcagcaataatgcctaaaacatagaaaacaatccttgtaatatttgtccatattgaacttagtc |
5453390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 5483354 - 5483405
Alignment:
| Q |
392 |
taaatataagttagatattactatgatccgatcaatctatttgtattagcct |
443 |
Q |
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|||||||| |||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
5483354 |
taaatataggttagatattactatgttcccatcactctatttgtattagcct |
5483405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 5444800 - 5444842
Alignment:
| Q |
125 |
ttcttatcagtaataatgcctaaaacatagaacacaatgcttg |
167 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
5444800 |
ttcttatcagtaataatgcctaaaacatagaaaacaatccttg |
5444842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 5855746 - 5855661
Alignment:
| Q |
121 |
aaaattcttatcagtaataatgcctaaaacatagaacacaatgcttgtaatatttgttgatattggacatagtccatgtatagtct |
206 |
Q |
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| T |
5855746 |
aaaattcttattagtattaatacttgaaacatagaaaacaatccttgtaatatttgtccacattgaagacaatccatgtatagtct |
5855661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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