View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10291_high_11 (Length: 312)

Name: NF10291_high_11
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10291_high_11
NF10291_high_11
[»] chr3 (1 HSPs)
chr3 (1-294)||(23506289-23506582)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 23506289 - 23506582
Alignment:
Q  1 aaccatatttgtggatctaaaggtccaaaaccttgtaacacttcaatacaacttcaatacctatattttaaggtggttcacttcgtttctctttctacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  23506289 aaccatatttgtggatctaaaggtccaaaaccttgtaacacttcaatacaacttcaatacctatcttttaaggtggttcacttggtttctctttctacat 23506388  T
Q  101 ccaagccacaaaatcccttagattttttcctcaaaaccattaatgaaaaccatcgtttcatacgtcaaactcaaaatcagtgaacaatgaataaccatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23506389 ccaagccacaaaatcccttagattttttcctcaaaaccattaatgaaaaccatcgtttcatacgtcaaactcaaaatcagtgaacaatgaataaccatta 23506488  T
Q  201 aacaatttttgggacaaatagtaacctaaaacattgcctattttgctatatccctttcaagtaaccatcatcatttataacaaaagccctgaat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23506489 aacaatttttgggacaaatagtaacctaaaacattgcctattttgctatatccctttcaagtaaccatcatcatttataacaaaagccctgaat 23506582  T

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