View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10291_high_19 (Length: 207)
Name: NF10291_high_19
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10291_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 39296162 - 39296332
Alignment:
| Q |
20 |
ttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtttattctcttgttctcacgatcaaaaacaacgat |
119 |
Q |
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| T |
39296162 |
ttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtatattctctcgttctcacgatcacaaacaacgat |
39296261 |
T |
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| Q |
120 |
gaaaacacttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctc |
190 |
Q |
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| T |
39296262 |
gaaaacacttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctc |
39296332 |
T |
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Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 39289279 - 39289449
Alignment:
| Q |
20 |
ttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtttattctcttgttctcacgatcaaaaacaacgat |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||| |||||| |
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| T |
39289279 |
ttcatttcttcaatgtattggaggaattcatagtggctgcggcgtttcttcgatagcatggctagtttattctctcgtactcacgatcaaaagcaacgac |
39289378 |
T |
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| Q |
120 |
gaaaaca---cttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgct |
187 |
Q |
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| T |
39289379 |
aaaaccaattcttctccggagatactcggtgttgcattcgccatcctctcactcattacactctcttcgct |
39289449 |
T |
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