View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10291_high_2 (Length: 453)
Name: NF10291_high_2
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10291_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 43091585 - 43092004
Alignment:
| Q |
15 |
atgaagaagaagtaaagggtagtgtgaatgtaaagagttttgctggtgactacacatcaatgggagggaaggtttcacttgtgaggagtccgacaaaatc |
114 |
Q |
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| T |
43091585 |
atgaagaagaagtaaagggtagtgtgaatgtaaagagttttgctggtgactacacatcaatgggagggaaggtttcacttgtgaggagtccgacaaaatc |
43091684 |
T |
|
| Q |
115 |
tagatggtttttgtttatgtttggaatgtcgtcgagttccaggatgtcttccaaggagatgcagcttagtgacattagaaatagacagagcagaagtcgg |
214 |
Q |
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| T |
43091685 |
tagatggtttttgtttatgtttggaatgtcgtcgagttccaggatgtcttccaaggagatgcagcttagtgacattagaaatagacagagcagaagtcgg |
43091784 |
T |
|
| Q |
215 |
agggagccgatgacgatgtttccgacaccggaaaatgggaaagaagttgttaagagtaagagaaatgggaatagtaaagggatgtggaagattttgaagt |
314 |
Q |
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| T |
43091785 |
agggagccgatgacgatgtttccgacaccggaaaatgggaaagaagttgttaagagtaagagaaatgggaatagtaaagggatgtggaagattttgaagt |
43091884 |
T |
|
| Q |
315 |
caatttcattggttttaggatgcagtagtagtaaacttgctaatgatgtagtaaaggctgcttttgtgtgaattttggatatcatcttgtgcttaatttc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091885 |
caatttcattggttttaggatgcagtagtagtaaacttgctaatgatgtagtaaaggctgcttttgtgtgaattttggatatcatcttgtgcttaatttc |
43091984 |
T |
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| Q |
415 |
aatgtttattgcacattact |
434 |
Q |
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| T |
43091985 |
aatgtttattgcacattact |
43092004 |
T |
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