View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10291_low_10 (Length: 351)
Name: NF10291_low_10
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10291_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 37376695 - 37377045
Alignment:
| Q |
1 |
gcaacgtatagggaaaatgaattctatgaaaggagagaaacagatacattcgttaggcctcactggctgcgcagaatcaaaagcaattggttggactact |
100 |
Q |
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| T |
37376695 |
gcaacgtatagggaaaatgaattctatgaaaggagagaaacagatacattcgttaggcctcactggctgcgcagaatcaaaagcaattggttggactact |
37376794 |
T |
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| Q |
101 |
ggaaatcaaagtcttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttc |
200 |
Q |
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| T |
37376795 |
ggaaatcaaagtcttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttc |
37376894 |
T |
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| Q |
201 |
cattgagattgtaataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgt |
300 |
Q |
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| T |
37376895 |
cattgagattgtaataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgt |
37376994 |
T |
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| Q |
301 |
tacagagatggagagagtatgtatcatgaggactatcgcgggaaacatcat |
351 |
Q |
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| T |
37376995 |
tacagagatggagagagtatgtatcatgaggactatcgcgggaaacatcat |
37377045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 37384083 - 37384411
Alignment:
| Q |
23 |
tctatgaaaggagagaaacagatacattcgttaggcctcactggctgcgcagaatcaaaagcaattggttggactactggaaatcaaagtcttaaccgag |
122 |
Q |
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| T |
37384083 |
tctaagaaaggaaagaaacatatacattcattagccctcactggctgcacagaatcaaaagcaattggttggactactgaaaatcaaagtctgaaccaag |
37384182 |
T |
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| Q |
123 |
atcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttccattgagattgtaataacgctt |
222 |
Q |
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| T |
37384183 |
atcttgaaagaatctgttggaaagggagtttagaaatcaagaatcagaaccctttctgcgtacacaagagagaccttcaattcagattgtaatcaggctt |
37384282 |
T |
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| Q |
223 |
tatctttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgttacagagatggagagagtatgt |
322 |
Q |
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| T |
37384283 |
tatctttctctgttctatttatataatttggttgattattttttttgtcaacaacataaattgttttattgatattgttgcagagatggagagaatacgc |
37384382 |
T |
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| Q |
323 |
atcatgaggactatcgcgggaaacatcat |
351 |
Q |
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| T |
37384383 |
atcaagaggactatcgcgggaaacatcat |
37384411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 350
Target Start/End: Complemental strand, 41228431 - 41228115
Alignment:
| Q |
28 |
gaaaggagagaaacagatacattcgttaggcctcactggctgcgcagaatcaaaagcaattggttggactactggaaatcaaagtcttaaccgagatctt |
127 |
Q |
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| T |
41228431 |
gaaaggaaagaaacctatacattcattaggccttactagctgcactgaatcaaaggcaagtggttggactattgaaaata------ttaaccaagatctt |
41228338 |
T |
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| Q |
128 |
gaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttccattgagattgtaataacgctttatct |
227 |
Q |
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| T |
41228337 |
gaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaacttcaattcagattgtaatcacactttatct |
41228238 |
T |
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| Q |
228 |
ttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgttacagagatggagagagtatgtatcat |
327 |
Q |
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| T |
41228237 |
ttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttgttgttacagagacaaagagagtaagtatcaa |
41228138 |
T |
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| Q |
328 |
gaggactatcgcgggaaacatca |
350 |
Q |
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| T |
41228137 |
gaggactatcgcgggaaacatca |
41228115 |
T |
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