View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10291_low_16 (Length: 294)

Name: NF10291_low_16
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10291_low_16
NF10291_low_16
[»] chr7 (3 HSPs)
chr7 (10-199)||(35247439-35247628)
chr7 (10-105)||(35239222-35239317)
chr7 (147-194)||(35239145-35239192)
[»] chr4 (1 HSPs)
chr4 (154-192)||(15034207-15034245)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 35247628 - 35247439
Alignment:
Q  10 aagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataataatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35247628 aagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataataatg 35247529  T
Q  110 atgacgaggacgacgatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagttacaagtatgtcacca 199  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35247528 atgacgacgacgaagatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagttacaagtatgtcacca 35247439  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 35239317 - 35239222
Alignment:
Q  10 aagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataat 105  Q
    ||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  35239317 aagaacaaagaaaaagagaatgaatattttttggatgcaaacgaagatgaaaccgacattgaagctgttaactacgatagtgacagtagcaataat 35239222  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 35239192 - 35239145
Alignment:
Q  147 acctgaatctttcacttctcaacaatggcctcaaagttacaagtatgt 194  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35239192 acctgaatctttcacttctcaacaatggcctcaaacttacaagtatgt 35239145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 15034207 - 15034245
Alignment:
Q  154 tctttcacttctcaacaatggcctcaaagttacaagtat 192  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  15034207 tctttcacttctcagcaatggcctcaaagctacaagtat 15034245  T

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