View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10291_low_19 (Length: 253)

Name: NF10291_low_19
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10291_low_19
NF10291_low_19
[»] chr8 (28 HSPs)
chr8 (12-250)||(10667959-10668189)
chr8 (12-237)||(24191380-24191611)
chr8 (137-237)||(39174740-39174840)
chr8 (147-237)||(32553930-32554020)
chr8 (147-237)||(35801002-35801092)
chr8 (147-237)||(39173119-39173209)
chr8 (137-237)||(10669458-10669558)
chr8 (6-98)||(38129-38223)
chr8 (155-237)||(7844714-7844796)
chr8 (12-98)||(22621019-22621105)
chr8 (147-237)||(32552299-32552389)
chr8 (137-237)||(24192676-24192776)
chr8 (15-124)||(43203164-43203274)
chr8 (137-237)||(35799455-35799554)
chr8 (16-101)||(31844513-31844599)
chr8 (16-124)||(39516384-39516494)
chr8 (12-89)||(24068472-24068548)
chr8 (12-124)||(42793821-42793934)
chr8 (137-205)||(43202131-43202199)
chr8 (61-124)||(7770116-7770179)
chr8 (61-124)||(7777793-7777856)
chr8 (155-237)||(35070688-35070770)
chr8 (61-98)||(7795912-7795949)
chr8 (37-101)||(7844854-7844917)
chr8 (137-205)||(31845807-31845875)
chr8 (12-97)||(45395900-45395985)
chr8 (61-98)||(7815189-7815226)
chr8 (188-228)||(32798596-32798636)
[»] chr3 (24 HSPs)
chr3 (12-237)||(10301700-10301931)
chr3 (12-124)||(10339873-10339986)
chr3 (156-237)||(7270326-7270407)
chr3 (137-237)||(53194624-53194724)
chr3 (12-124)||(47766835-47766948)
chr3 (65-237)||(7271529-7271706)
chr3 (131-237)||(48083230-48083336)
chr3 (156-237)||(44601652-44601733)
chr3 (12-124)||(48253052-48253165)
chr3 (147-206)||(10338772-10338831)
chr3 (161-237)||(48084990-48085066)
chr3 (19-98)||(21515408-21515486)
chr3 (137-236)||(54110296-54110395)
chr3 (17-124)||(14744185-14744291)
chr3 (23-96)||(53809388-53809462)
chr3 (12-101)||(44601794-44601882)
chr3 (52-101)||(54750368-54750417)
chr3 (137-237)||(44603055-44603155)
chr3 (65-101)||(48084676-48084712)
chr3 (12-101)||(53193236-53193325)
chr3 (159-237)||(54108542-54108620)
chr3 (137-237)||(10300942-10301043)
chr3 (140-237)||(10339986-10340082)
chr3 (156-237)||(46368811-46368892)
[»] chr4 (33 HSPs)
chr4 (12-237)||(49895043-49895275)
chr4 (12-237)||(44499867-44500097)
chr4 (137-237)||(44498463-44498563)
chr4 (12-124)||(47667297-47667410)
chr4 (130-237)||(56085350-56085457)
chr4 (148-244)||(19750317-19750413)
chr4 (148-244)||(19789393-19789489)
chr4 (12-98)||(41348384-41348470)
chr4 (6-124)||(46795904-46796023)
chr4 (155-237)||(4872262-4872344)
chr4 (12-98)||(3528335-3528425)
chr4 (12-101)||(26631099-26631190)
chr4 (137-237)||(45535049-45535149)
chr4 (137-226)||(1519825-1519914)
chr4 (52-205)||(36846482-36846640)
chr4 (12-98)||(56001152-56001240)
chr4 (137-237)||(23104020-23104120)
chr4 (12-124)||(29665458-29665571)
chr4 (12-124)||(38554048-38554161)
chr4 (130-205)||(1521200-1521275)
chr4 (62-101)||(56086483-56086522)
chr4 (13-123)||(39056548-39056659)
chr4 (188-228)||(1831327-1831367)
chr4 (37-101)||(4872139-4872202)
chr4 (188-232)||(6348163-6348207)
chr4 (137-205)||(26629826-26629894)
chr4 (188-228)||(37882846-37882886)
chr4 (52-98)||(26376455-26376501)
chr4 (68-123)||(35348920-35348975)
chr4 (12-101)||(45536355-45536444)
chr4 (137-237)||(4871497-4871597)
chr4 (188-228)||(6349617-6349657)
chr4 (188-228)||(27850996-27851036)
[»] chr7 (21 HSPs)
chr7 (12-237)||(3330695-3330923)
chr7 (137-237)||(44376701-44376801)
chr7 (137-237)||(44385568-44385668)
chr7 (138-237)||(3332171-3332270)
chr7 (137-237)||(44372732-44372832)
chr7 (137-237)||(44381588-44381688)
chr7 (147-237)||(9081396-9081486)
chr7 (6-124)||(17288118-17288239)
chr7 (130-224)||(29589276-29589370)
chr7 (6-124)||(41515115-41515234)
chr7 (137-237)||(16755874-16755974)
chr7 (162-237)||(48312691-48312766)
chr7 (15-124)||(45721653-45721763)
chr7 (39-205)||(43442672-43442844)
chr7 (13-123)||(10955968-10956079)
chr7 (17-124)||(35296706-35296812)
chr7 (159-236)||(48312028-48312105)
chr7 (52-124)||(28326315-28326387)
chr7 (187-228)||(32256458-32256499)
chr7 (188-228)||(40811352-40811392)
chr7 (188-228)||(47456439-47456479)
[»] chr1 (23 HSPs)
chr1 (12-237)||(6047922-6048151)
chr1 (12-98)||(26803101-26803187)
chr1 (130-237)||(6049430-6049537)
chr1 (12-98)||(40110537-40110623)
chr1 (130-237)||(3615250-3615357)
chr1 (130-237)||(52076534-52076641)
chr1 (137-237)||(3617510-3617610)
chr1 (130-237)||(9226221-9226328)
chr1 (130-226)||(5611740-5611836)
chr1 (130-205)||(26287790-26287865)
chr1 (12-101)||(48528777-48528868)
chr1 (163-237)||(17190556-17190630)
chr1 (12-98)||(24516479-24516568)
chr1 (12-124)||(40533484-40533598)
chr1 (52-101)||(5611880-5611929)
chr1 (137-226)||(26286426-26286515)
chr1 (156-237)||(52078126-52078207)
chr1 (137-205)||(5613098-5613166)
chr1 (137-237)||(27556273-27556373)
chr1 (12-101)||(12667156-12667246)
chr1 (65-101)||(26287711-26287747)
chr1 (188-228)||(50444762-50444802)
chr1 (188-228)||(52627527-52627567)
[»] chr2 (5 HSPs)
chr2 (137-237)||(23233709-23233809)
chr2 (155-237)||(23231543-23231625)
chr2 (12-98)||(4919975-4920062)
chr2 (49-98)||(42368230-42368279)
chr2 (12-96)||(25569916-25570000)
[»] chr5 (8 HSPs)
chr5 (12-214)||(10736819-10737028)
chr5 (137-237)||(9220473-9220573)
chr5 (24-124)||(8188098-8188197)
chr5 (15-101)||(4124902-4124990)
chr5 (12-96)||(9170774-9170858)
chr5 (52-124)||(9219298-9219370)
chr5 (12-101)||(1103849-1103939)
chr5 (188-228)||(325249-325289)
[»] chr6 (4 HSPs)
chr6 (37-228)||(18242217-18242414)
chr6 (138-221)||(18240418-18240502)
chr6 (12-101)||(11968349-11968438)
chr6 (37-98)||(29675622-29675683)
[»] scaffold0219 (1 HSPs)
scaffold0219 (16-96)||(7044-7124)
[»] scaffold0687 (1 HSPs)
scaffold0687 (61-98)||(6497-6534)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 10668189 - 10667959
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    ||||||||||||| |||||||||| |||||||||||||  || ||||||||||||  |||||||||||||||||||    ||||  ||||        ||    
T  10668189 agagagaagatgaagaaaagtgaaaaaattatgtgctgacgggtcactgttagatttaatggacattcaatcaaat----aaaa--aaat--------tt 10668104  T
Q  112 agacattaaaaaa------ggtgagaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    |||||||||||||      | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  10668103 agacattaaaaaaccaacggatgtgaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaatttatgggaccaaaatgaaaac 10668004  T
Q  206 tcgaaattagttgagggaccatttgattaattcagctttacactt 250  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||    
T  10668003 tcgaaattagttgagggaccatttgattaatttagccttacactt 10667959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 24191611 - 24191380
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    ||||||||||||||||||| | || ||| ||| ||||||  |||||||| | ||||||||||||||| |||||||| ||||||||||||||       ||    
T  24191611 agagagaagatgatgaaaaataaaaaaaattaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatt 24191513  T
Q  111 tagacattaaaaaa-----ggtgag-accaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaa 204  Q
    |||||||||| |||     || | | | ||| |||| |||||||||||| ||| || |||||||||| ||||||||| | | ||||||| |||| |||||    
T  24191512 tagacattaacaaactaacggagtggatcaatttgagtaacagagcaaaagttaagagaccaaaatgatgattttaagagttatgggaccaaaacgaaaa 24191413  T
Q  205 ctcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||||||||||||| |||||||||||||    
T  24191412 ctcgaaattagttgagggatcatttgattaatt 24191380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 39174740 - 39174840
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||||||||| || |||| ||||||||||||   |||||||||||||||||||||||||||    
T  39174740 ttgaataacggagcaaaagttgagggaccaaaatgatgattttaaaacttataggaccaaaatgaaaacttataattagttgagggaccatttgattaat 39174839  T
Q  237 t 237  Q
    |    
T  39174840 t 39174840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 32553930 - 32554020
Alignment:
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||| |||||||||||||||||  |||||||| ||| || |||  |||||||||||||| ||||||||||||||||||||||||||||    
T  32553930 gagcaaaagttgagggaccaaaatgacgattttaagacttataggatcaaaatgaaaactcgtaattagttgagggaccatttgattaatt 32554020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 35801002 - 35801092
Alignment:
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||| |||||||||| ||||||  |||||||| ||| || |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  35801002 gagcaaaagttgagggactaaaatgacgattttaagacttataggaccaaaatgaaaactcgtaattagttgagggaccatttgattaatt 35801092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 39173209 - 39173119
Alignment:
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||| |||||||||||||||||  |||||||| ||| || |||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  39173209 gagcaaaagttgagggaccaaaatgacgattttaagacttataggaccaaaatgaaaactcgtaattaattgagggaccatttgattaatt 39173119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 10669458 - 10669558
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||| ||||||||| ||||||||| | | ||||||| ||||||||||||| |||||||||||||||| ||| |||||||    
T  10669458 ttgaataacggagcaaacgttgaggtaccaaaatgttgattttaagatttatgggaccaaaatgaaaactcaaaattagttgagggactattggattaat 10669557  T
Q  237 t 237  Q
    |    
T  10669558 t 10669558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 38223 - 38129
Alignment:
Q  6 aggagcagagagaagatgatgaaaagtg--aagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    ||||| ||||||||||||||||||||||  || |||||| ||||||  |||||||||||| ||||||||||||| |||| |||||||||||||||    
T  38223 aggagaagagagaagatgatgaaaagtggaaaaaaattaggtgctgacggttcactgttaaatacaatggacatgcaattaaatggttaaaatca 38129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 7844796 - 7844714
Alignment:
Q  155 gttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||||||||||| ||||||||| ||| ||||||| |||||||||||| | |||||||| |||||||||| ||||||||    
T  7844796 gttgagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaactggtaattagttaagggaccattggattaatt 7844714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 22621019 - 22621105
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||||||||| |||||| ||| ||  ||||||| |||| ||||||||||||| |||||||||| |||||||||    
T  22621019 agagagaagatgatgaaaagtgaaaaaattaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatca 22621105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 32552389 - 32552299
Alignment:
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||| |||||||||||||||||  |||||||| ||| || |||  |||||||||||||| ||||||||||||||||||| ||||||||    
T  32552389 gagcaaaagttgagggaccaaaatgacgattttaagacttataggatcaaaatgaaaactcgtaattagttgagggaccattagattaatt 32552299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 24192676 - 24192776
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||| ||| |||||| |||||||||| ||||||||| | | ||||||| |||| ||||||||||||||| |||||||||||||| ||||||    
T  24192676 ttgattaacggagtaaaagttgagagaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaattaattgagggaccatttaattaat 24192775  T
Q  237 t 237  Q
    |    
T  24192776 t 24192776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 43203164 - 43203274
Alignment:
Q  15 gagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttag 113  Q
    ||||||||||||||||||||| ||| ||| |||||| | ||||||| ||| ||||||||||||| |||||||||| ||||||| ||||       |||||    
T  43203164 gagaagatgatgaaaagtgaaaaaaattaggtgctgatagttcacttttaaatacaatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttag 43203263  T
Q  114 acattaaaaaa 124  Q
    |||||||||||    
T  43203264 acattaaaaaa 43203274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 35799554 - 35799455
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||||||||| | ||||||| ||| ||  ||| |||||||||||| | |||||||||| ||||||||||||||||    
T  35799554 ttgaataacggagcaaaagttgagggaccaaaatgataattttaagacttataagaccaaaatgaaaacttgtaattagttga-ggaccatttgattaat 35799456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 31844599 - 31844513
Alignment:
Q  16 agaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||| ||||||||| ||| ||| |||||| |||||||||||||  |||||| ||||| ||||||| |||||||||||||||    
T  31844599 agaagatgattaaaagtgaaaaaaattaggtgctgatggttcactgttaattacaatagacatgcaatcaagtggttaaaatcaaat 31844513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 39516384 - 39516494
Alignment:
Q  16 agaagatgatgaaaagtgaagaaa--ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttag 113  Q
    ||||||||||||||| |||| |||  |||  |||||  |||||||| ||||||||||||||||| |||||||||||||||||||| ||       |||||    
T  39516384 agaagatgatgaaaaatgaaaaaagattagatgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacatgaaaaaatttag 39516483  T
Q  114 acattaaaaaa 124  Q
    |||||||||||    
T  39516484 acattaaaaaa 39516494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 24068548 - 24068472
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatgg 89  Q
    ||||||||||||||||  |||||| |||||| ||||||  |||||||| ||||||||||||||||| |||||||||||    
T  24068548 agagagaagatgatgatcagtgaa-aaattaggtgctgacggttcactattagatacaatggacatgcaatcaaatgg 24068472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 42793934 - 42793821
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    |||||||||||||||||||| ||| ||| ||| |||  | ||||||||| |||  |||||||||||| ||||| |||||||||||||| ||       ||    
T  42793934 agagagaagatgatgaaaagcgaaaaaaattaggtgtcgatggttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagttt 42793835  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  42793834 tagacattaaaaaa 42793821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 43202199 - 43202131
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    ||||||||| | ||||| ||||||||||||||||| ||||||||  | | |||||||||||||||||||    
T  43202199 ttgactaacggtgcaaacgttgagggaccaaaatgttgattttacgagttatgggactaaaatgaaaac 43202131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 7770179 - 7770116
Alignment:
Q  61 ttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa 124  Q
    ||||||||||||||||| |||||||||||||||||||| ||       ||||||||||||||||    
T  7770179 ttagatacaatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaa 7770116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 7777856 - 7777793
Alignment:
Q  61 ttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa 124  Q
    ||||||||||||||||| |||||||||||||||||||| ||       ||||||||||||||||    
T  7777856 ttagatacaatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaa 7777793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 35070688 - 35070770
Alignment:
Q  155 gttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||| ||||||||| ||||||||| ||| ||  ||| |||||||||||| | |||||  ||| |||||||||||||||||    
T  35070688 gttgaggaaccaaaatgatgattttaagacttatatgaccaaaatgaaaactggtaattaactgaaggaccatttgattaatt 35070770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 7795949 - 7795912
Alignment:
Q  61 ttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7795949 ttagatacaatggacatacaatcaaatggttaaaatca 7795912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 7844917 - 7844854
Alignment:
Q  37 aaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||| ||||||  |||||||| | |||||||||||| |||||||| |||||||||||||||||    
T  7844917 aaattaggtgctgacggttcactat-agatacaatggatattcaatcgaatggttaaaatcaaat 7844854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 31845807 - 31845875
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||||  | | ||||||| |||||||||||    
T  31845807 ttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaac 31845875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 45395900 - 45395985
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatc 97  Q
    |||| ||||||||||||||||||| ||| ||| |||| | ||||| ||| | | ||||||||||||| |||||||| ||||||||||    
T  45395900 agagggaagatgatgaaaagtgaaaaaaattaggtgccgatggtttactat-atatacaatggacatgcaatcaaacggttaaaatc 45395985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 7815226 - 7815189
Alignment:
Q  61 ttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||  |||||||||||||||||||    
T  7815226 ttagatacaatggacatagaatcaaatggttaaaatca 7815189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 32798596 - 32798636
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  32798596 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 32798636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 10301700 - 10301931
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    |||||||||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||       ||    
T  10301700 agagagaagatgatgaaa-gtgaaaaaaattatgtgctgatggttcactgttaaatacaatggacattcaatcaaatggttaaaatcaaatcaaaaaatt 10301798  T
Q  111 tagacattaaaaa------aggtgagaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaa 204  Q
    |||||||||||||      ||  || ||||||||||||||| ||||||| ||||| |||||| | || ||||||||| ||| ||||||| ||||||||||    
T  10301799 tagacattaaaaaactaacagaggacaccaaattgactaacggagcaaaagttgaaggaccatattgatgattttaagacttatgggaccaaaatgaaaa 10301898  T
Q  205 ctcgaaattagttgagggaccatttgattaatt 237  Q
     | |||||||||||||||||||||  |||||||    
T  10301899 atggaaattagttgagggaccattgaattaatt 10301931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 10339873 - 10339986
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    |||||||||||||||||||||||| ||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||||||       ||    
T  10339873 agagagaagatgatgaaaagtgaaaaaaattatgtgctgacggttcactgttaaatacaatggacattcaatcaaatggttcaaatcaaatcaaaaaatt 10339972  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  10339973 tagacattaaaaaa 10339986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 7270407 - 7270326
Alignment:
Q  156 ttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||||||||||||||| ||||||||| ||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||    
T  7270407 ttgagggaccaaaatgttgattttaagacttatgggacaaaaatgaaaactggaaattagttgagggatcatttgattaatt 7270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 53194624 - 53194724
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| ||||| |||||| ||||| ||||||||||| ||||||||||||| |||| || |||||||||||| | ||||||||||||||||||| |||||||    
T  53194624 ttgaataacaaagcaaaagttgaaggaccaaaatgatgattttaaaacttatggaaccaaaatgaaaactggtaattagttgagggaccattggattaat 53194723  T
Q  237 t 237  Q
    |    
T  53194724 t 53194724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 47766835 - 47766948
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    |||||||||||||| ||||||||| ||| ||| ||||||  |||||||| ||||||||||||||||| |||||||||||||||||||| ||       ||    
T  47766835 agagagaagatgatcaaaagtgaaaaaaattaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatt 47766934  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  47766935 tagacattaaaaaa 47766948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 7271529 - 7271706
Alignment:
Q  65 atacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa------ggtgagaccaaattgactaacagagcaaatgttg 158  Q
    ||||||||||||| |||||||||||||||||| ||||       ||||||||||||||||      |  | |||  |||||| |||| ||||||| |||     
T  7271529 atacaatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggaggggacggaattgaataacggagcaaaagtta 7271628  T
Q  159 agggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||| ||||| ||||||||||||||||| ||| || |||||| |||| | ||||||||||||||||||||| ||||||||    
T  7271629 agg-accaacatgctgattttaaaacttatgagattaaaataaaaattggaaattagttgagggaccattggattaatt 7271706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 48083336 - 48083230
Alignment:
Q  131 accaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttg 230  Q
    |||||||||| |||| ||||||| ||| ||||||||||||| ||||||||||||| | ||||  ||||||||||||   |||||||| ||||||||||||    
T  48083336 accaaattgaataacggagcaaaggttaagggaccaaaatgatgattttaaaacttaagggatcaaaatgaaaactgagaattagttaagggaccatttg 48083237  T
Q  231 attaatt 237  Q
    | |||||    
T  48083236 aataatt 48083230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 44601733 - 44601652
Alignment:
Q  156 ttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||||  | || ||||||||| ||| ||| ||||||||||||||||   ||||||||||||||||||||||||||||    
T  44601733 ttgagggacccgattgatgattttaagacttatgagactaaaatgaaaactgagaattagttgagggaccatttgattaatt 44601652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 48253165 - 48253052
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    ||||||||||||| ||||| |||| ||| ||| ||| ||   ||||||| ||||||||||||||||| |||||||||||||||||||| ||       ||    
T  48253165 agagagaagatgaagaaaaatgaaaaaaattaggtgttgacagttcactattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatt 48253066  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  48253065 tagacattaaaaaa 48253052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 10338831 - 10338772
Alignment:
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaact 206  Q
    ||||||| ||||||||||||||||| ||||||||||| | ||||||| ||||||||||||    
T  10338831 gagcaaacgttgagggaccaaaatgatgattttaaaatttatgggaccaaaatgaaaact 10338772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 48084990 - 48085066
Alignment:
Q  161 ggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||||| ||||||||| ||| | | ||| ||||| ||||||   ||||||||||||||||||||||||||||    
T  48084990 ggaccaaaatgatgattttaagacttaagagaccaaaataaaaactgagaattagttgagggaccatttgattaatt 48085066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 21515486 - 21515408
Alignment:
Q  19 agatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||  || |||||||||| || |||| |||| ||||||||||||||| | ||||||| ||||||||||||    
T  21515486 agatgatgaaaagaaaa-aaattatgtggtgatggtgcactattagatacaatggacctgcaatcaagtggttaaaatca 21515408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 54110296 - 54110395
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||||||||||| | |||||||| |||||| ||||||||| ||| ||| ||| |||  ||||| |   ||||| |||||||||||||||||||||    
T  54110296 ttgaataacagagcaaaagatgagggactaaaatgatgattttaagacttatgagaccaaagcgaaaattgagaattaattgagggaccatttgattaat 54110395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 14744291 - 14744185
Alignment:
Q  17 gaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagaca 116  Q
    ||||||||||||||||||| |||||| |||||| |||||||||  ||  || ||||||||| |||||||  ||||||||||| ||       ||||||||    
T  14744291 gaagatgatgaaaagtgaaaaaattaggtgctgatggttcact-atatgtataatggacatgcaatcaatcggttaaaatcatatcaaaaaatttagaca 14744193  T
Q  117 ttaaaaaa 124  Q
    ||||||||    
T  14744192 ttaaaaaa 14744185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 53809388 - 53809462
Alignment:
Q  23 gatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaat 96  Q
    ||||||||||||| ||| ||| ||||||  | |||||||||| ||||||| ||||| ||||||||||||||||||    
T  53809388 gatgaaaagtgaaaaaaattaggtgctgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaat 53809462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 44601882 - 44601794
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    ||||||| ||||||||||| | || ||||||  |||||  |||||||| | |||||||||||| |||||||| || ||||||||||||||    
T  44601882 agagagaggatgatgaaaaataaaaaaattagatgctgacggttcactat-agatacaatggatattcaatcgaacggttaaaatcaaat 44601794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 54750368 - 54750417
Alignment:
Q  52 ggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||| | ||||| ||||||| |||||||||||||||||||||||    
T  54750368 ggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaat 54750417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 44603055 - 44603155
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||   | || | ||||||| | | ||||||| ||||| ||||||  ||||||||||||||||||||| ||||||    
T  44603055 ttgaataacggagcaaaagttgagggactcgattgattattttaagatttatgggaccaaaataaaaactgaaaattagttgagggaccatttaattaat 44603154  T
Q  237 t 237  Q
    |    
T  44603155 t 44603155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 48084676 - 48084712
Alignment:
Q  65 atacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    ||||||||||||||||||| |||||||||||||||||    
T  48084676 atacaatggacattcaatcgaatggttaaaatcaaat 48084712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 53193325 - 53193236
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaat-tatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||||| ||||||||||| |||  || ||| ||  |||||||| | ||||||||||||||||||||  |||| ||||||||||||    
T  53193325 agagagaagatggtgaaaagtgaaaaaaaataggtgttgacggttcactat-agatacaatggacattcaattgaatgattaaaatcaaat 53193236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 54108620 - 54108542
Alignment:
Q  159 agggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||| ||||||| | ||||||| ||| ||||||| |||| |||||||   ||||||||||||||||||| | ||||||    
T  54108620 agggatcaaaatgataattttaagacttatgggaccaaaacgaaaactgagaattagttgagggaccattgggttaatt 54108542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 10301043 - 10300942
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaact-cgaaattagttgagggaccatttgattaa 235  Q
    |||| |||| ||||||| |||||||||||| | || ||||||||| | | |||| || ||||||||||||   ||||||||| ||||||||||  |||||    
T  10301043 ttgaataacggagcaaacgttgagggaccagattgatgattttaagatttatggaaccaaaatgaaaactgaaaaattagttaagggaccattgaattaa 10300944  T
Q  236 tt 237  Q
    ||    
T  10300943 tt 10300942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 10339986 - 10340082
Alignment:
Q  140 actaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||||| ||||||| ||||| |||||||  || ||||||||| |   ||| ||| |||||||||| | |||||||||||||||||||||  |||||||    
T  10339986 actaacggagcaaaagttgaaggaccaat-tgatgattttaagaaatatgagaccaaaatgaaaaatggaaattagttgagggaccattgaattaatt 10340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 46368892 - 46368811
Alignment:
Q  156 ttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||| ||| ||||||| |||||||||  || ||| ||| |||||||| |||   |||||| |||||||||||||||||||||    
T  46368892 ttgaaggatcaaaatgatgattttaagccttatgagaccaaaatgaatacttataattagctgagggaccatttgattaatt 46368811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 49895275 - 49895043
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    ||||||||||||| ||||||  || |||||| ||| || ||||||||| |||||||||| |||| | |||||||||||||| ||||||||        ||    
T  49895275 agagagaagatgaagaaaaggaaaaaaattaggtgttgatggttcactattagatacaacggacctgcaatcaaatggttagaatcaaatcaaaaaaatt 49895176  T
Q  112 agacattaaaaaa-----ggt-gagaccaaattgactaacagagcaaatgttgaggg-accaaaatgctgattttaaaactcatgggactaaaatgaaaa 204  Q
    || |||||| |||     ||| ||||||||||||| | || ||||||| |||||||| ||||||||| | ||| || |||| ||||||| ||||||||||    
T  49895175 aggcattaagaaactaacggtagagaccaaattgaatgacggagcaaaagttgaggggaccaaaatgataattatagaacttatgggaccaaaatgaaaa 49895076  T
Q  205 ctcgaaattagttgagggaccatttgattaatt 237  Q
    || | ||||||||||||||||||||||||||||    
T  49895075 ctggtaattagttgagggaccatttgattaatt 49895043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 44499867 - 44500097
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    ||||||||||||||||||| | || |||||| ||||||  |||||||| | ||||||||||||||| |||||||| ||||||||||||||       | |    
T  44499867 agagagaagatgatgaaaaataaaaaaattaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatat 44499965  T
Q  112 agacattaaaaaa-----ggtgag-accaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    ||||||||| |||     || | | | ||| ||||||||| ||||||| ||| ||||||||||||| ||||||||| | | ||||||| |||| ||||||    
T  44499966 agacattaacaaactaacggagtggatcaatttgactaacggagcaaaagttaagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaac 44500065  T
Q  206 tcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||| ||||||||| |||| |||||||    
T  44500066 tcgaaattaattgagggacaatttcattaatt 44500097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 44498563 - 44498463
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||| | | ||||||| |||| ||||||||||||||| |||||||||||||| ||||||    
T  44498563 ttgaataacagagcaaaagttgagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaactcgaaattaattgagggaccatttcattaat 44498464  T
Q  237 t 237  Q
    |    
T  44498463 t 44498463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 47667410 - 47667297
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    |||||||||||||||||||||||| ||| ||| ||||||  |||||||| ||||||||||||||||| |||||||||||||||||||| ||       ||    
T  47667410 agagagaagatgatgaaaagtgaaaaaaattaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatt 47667311  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  47667310 tagacattaaaaaa 47667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 56085457 - 56085350
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccattt 229  Q
    ||||||||||| ||||  ||||||  |||||||||||||||| ||||||||| ||| ||| ||| |||||||||||| | |||||||||| |||||||||    
T  56085457 gaccaaattgaataacgaagcaaacattgagggaccaaaatgatgattttaagacttatgagaccaaaatgaaaactggtaattagttgatggaccattt 56085358  T
Q  230 gattaatt 237  Q
    ||||||||    
T  56085357 gattaatt 56085350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 19750317 - 19750413
Alignment:
Q  148 agcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaattcagcttt 244  Q
    |||||| ||||| |||| |||||| ||||||||||||| ||||||  |||||||||||| | ||||||||||||||||||| |||||||| ||||||    
T  19750317 agcaaaagttgaaggactaaaatgatgattttaaaacttatgggatcaaaatgaaaactagtaattagttgagggaccattggattaatttagcttt 19750413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 19789489 - 19789393
Alignment:
Q  148 agcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaattcagcttt 244  Q
    |||||| ||||| |||| |||||| ||||||||||||| ||||||  |||||||||||| | ||||||||||||||||||| |||||||| ||||||    
T  19789489 agcaaaagttgaaggactaaaatgatgattttaaaacttatgggatcaaaatgaaaactagtaattagttgagggaccattggattaatttagcttt 19789393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 41348470 - 41348384
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||||||||| |||||| ||| ||  ||||||| |||| ||||||||||||| |||||||||| |||||||||    
T  41348470 agagagaagatgatgaaaagtgaaaaaattaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatca 41348384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 46795904 - 46796023
Alignment:
Q  6 aggagcagagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnn 104  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||| |  |||||||| ||| ||||||||||||| |||||||||||||||||||| ||       
T  46795904 aggagaagagagaagatgatgaaaagtgaaaaaaattaggtgccgacggttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaa 46796003  T
Q  105 nnnntttagacattaaaaaa 124  Q
        ||||||||||||||||    
T  46796004 aaaatttagacattaaaaaa 46796023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 4872262 - 4872344
Alignment:
Q  155 gttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||||||||||||| || ||||||||| ||| ||||||| ||||||||||||   ||||||||||||||||||| ||||||||    
T  4872262 gttgagggaccaaattgatgattttaagacttatgggaccaaaatgaaaactgagaattagttgagggaccattggattaatt 4872344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 3528425 - 3528335
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaa----attatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||||||||| ||    |||| ||| ||  |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  3528425 agagagaagatgatgaaaagtgaaaaataaaattaggtgttgacggttcactattagatacaatggacatgcaatcaaatggttaaaatca 3528335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 26631099 - 26631190
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa--ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||||||| ||||||||| |||  ||| |||||| || |||||||||| ||||||| ||||| ||||||| |||||||||||||||    
T  26631099 agagagaagatgattaaaagtgaaaaaaaattaggtgctgatgattcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaat 26631190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 45535149 - 45535049
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||||||||||| ||||||||||   | || ||||||||| ||| ||||||| ||||||||||||   ||||||||||||||| |||||||||||    
T  45535149 ttgaataacagagcaaaagttgagggactcgattgatgattttaagacttatgggaccaaaatgaaaactgagaattagttgagggactatttgattaat 45535050  T
Q  237 t 237  Q
    |    
T  45535049 t 45535049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 1519914 - 1519825
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggacca 226  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||  | | ||||||| |||||||||||   |||||||||  |||||||    
T  1519914 ttgactaacagagcaaatgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggacca 1519825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 36846482 - 36846640
Alignment:
Q  52 ggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaa-----aggtgagaccaaattgactaaca 146  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||||||||       |||||||||||||||      |  | |||||||||||| |||     
T  36846482 ggttcactgttaaatataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaactaacggaagggaccaaattgacgaacg 36846581  T
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    |||||||    |||||||||||||| ||||||||  | | ||||||| |||||||||||    
T  36846582 gagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 36846640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 56001152 - 56001240
Alignment:
Q  12 agagagaagatgatgaaaagtg--aagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||| |||||||||||  || |||||| |||| |  | |||||| ||||||||||||||||| ||||||||||||||||||||    
T  56001152 agagagaagaagatgaaaagtggaaaaaaattaggtgccgacgattcactattagatacaatggacatgcaatcaaatggttaaaatca 56001240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 23104020 - 23104120
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||   | || ||||||||| ||| ||| ||| ||||||||||||   |||||||||||||||||||||||||||    
T  23104020 ttgaataacggagcaaaagttgagggactcgattgatgattttaagacttatgagaccaaaatgaaaactgagaattagttgagggaccatttgattaat 23104119  T
Q  237 t 237  Q
    |    
T  23104120 t 23104120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 29665458 - 29665571
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    ||||||||||||| |||||||||| ||| ||| ||  ||  |||||||  ||||||||||||||||| |||||||||||||||||||| ||       ||    
T  29665458 agagagaagatgaagaaaagtgaaaaaaattaggtattgacggttcacaattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatt 29665557  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  29665558 tagacattaaaaaa 29665571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 38554161 - 38554048
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    |||||||||||||||||||||||| ||| ||| ||| ||  |||||||| ||| ||||||||||| | | |||||||||||||||||| ||       ||    
T  38554161 agagagaagatgatgaaaagtgaaaaaaattaagtgatgacggttcactattaaatacaatggacgtgcgatcaaatggttaaaatcatatcaaaaaatt 38554062  T
Q  111 tagacattaaaaaa 124  Q
    ||||||||||||||    
T  38554061 tagacattaaaaaa 38554048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 1521200 - 1521275
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    |||||||||||||||| ||| ||| ||||||||||||||||| ||||||||  | | ||||||  |||||||||||    
T  1521200 gaccaaattgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaac 1521275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 56086483 - 56086522
Alignment:
Q  62 tagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  56086483 tagatacaatggacattcaatcgaatggttaaaatcaaat 56086522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 39056659 - 39056548
Alignment:
Q  13 gagagaagatgatgaaaagtgaaga-aattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    |||||||||||||| |||||||| | ||||| ||| ||  ||| |||| ||| |  ||||||||| ||||||||||||||||||||||||       |||    
T  39056659 gagagaagatgatggaaagtgaaaacaattaggtgttgacggtccactattaaacgcaatggacactcaatcaaatggttaaaatcaaatcaaaaatttt 39056560  T
Q  112 agacattaaaaa 123  Q
    ||||||||||||    
T  39056559 agacattaaaaa 39056548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 1831327 - 1831367
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  1831327 tgggactaaaatgaaaacttgaaattaattgagggaccatt 1831367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 4872139 - 4872202
Alignment:
Q  37 aaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||| ||||||  |||||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  4872139 aaattaggtgctgacggttcact-ttagatacaatggacattcgatcgaatggttaaaatgaaat 4872202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 6348207 - 6348163
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatttgat 232  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  6348207 tgggaccaaaatgaaaacttgaaattatttgagggaccatttgat 6348163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 26629894 - 26629826
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||||  | | ||||||| |||||||||||    
T  26629894 ttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaac 26629826  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 37882886 - 37882846
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  37882886 tgggactaaaatgaaaacttgaaattatttgagggaccatt 37882846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 26376501 - 26376455
Alignment:
Q  52 ggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||| ||| |||||||||||| |||| ||||||||||||||||||||    
T  26376501 ggttaactattagatacaatgtacatgcaatcaaatggttaaaatca 26376455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 35348975 - 35348920
Alignment:
Q  68 caatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaa 123  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||    
T  35348975 caatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaa 35348920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 45536355 - 45536444
Alignment:
Q  12 agagagaagatgatgaaaagt-gaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    ||||||||||||||||||| |  || ||||||  |||||  ||||||||  ||||||||||||| |||||||| || ||||||||||||||    
T  45536355 agagagaagatgatgaaaaataaaaaaaattagatgctgacggttcact-atagatacaatggatattcaatcgaacggttaaaatcaaat 45536444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 4871597 - 4871497
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| |||||||  |||| |||| ||| || ||||||||| ||| ||| ||| |||||||||| | | ||||||||||||| |||||  ||||||    
T  4871597 ttgaataacggagcaaacattgaaggactaaattgatgattttaagacttatgagaccaaaatgaaaattgggaattagttgaggggccattgaattaat 4871498  T
Q  237 t 237  Q
    |    
T  4871497 t 4871497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6349617 - 6349657
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  6349617 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 6349657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 27850996 - 27851036
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  27850996 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 27851036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 3330923 - 3330695
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    ||||||||||||||||||| | ||  ||||| ||||||  |||||||| | |||||||||| |||| |||||||| ||||||||||||||       |||    
T  3330923 agagagaagatgatgaaaaataaa--aattaagtgctgacggttcactat-agatacaatgaacatgcaatcaaacggttaaaatcaaatcaaaaaattt 3330827  T
Q  112 agacattaaaaaa------ggtgagaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    ||||||||| |||      |   |||||||||||| || | ||||||||||||||||||| ||||| ||||||||| ||| | | ||| ||||||||||     
T  3330826 agacattaacaaactaattgagtagaccaaattgaatagcggagcaaatgttgagggaccgaaatggtgattttaagacttaagagaccaaaatgaaaat 3330727  T
Q  206 tcgaaattagttgagggaccatttgattaatt 237  Q
      ||||||||||||||||||||||||||||||    
T  3330726 gggaaattagttgagggaccatttgattaatt 3330695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 44376701 - 44376801
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    ||||||||  ||||||| ||| ||||||||||||| ||||||||||| | ||||||| ||||  |||| |||||||||||||||||||||||||||||||    
T  44376701 ttgactaatggagcaaaagttaagggaccaaaatgatgattttaaaagttatgggaccaaaacaaaaattcgaaattagttgagggaccatttgattaat 44376800  T
Q  237 t 237  Q
    |    
T  44376801 t 44376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 44385568 - 44385668
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    ||||||||  ||||||| ||| ||||||||||||| ||||||||||| | ||||||| ||||  |||| |||||||||||||||||||||||||||||||    
T  44385568 ttgactaatggagcaaaagttaagggaccaaaatgatgattttaaaagttatgggaccaaaacaaaaattcgaaattagttgagggaccatttgattaat 44385667  T
Q  237 t 237  Q
    |    
T  44385668 t 44385668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 3332171 - 3332270
Alignment:
Q  138 tgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||||||| ||||||| |||||||||||||| || |||||||| || | ||||||| ||||||||||||   ||||||||||||||||||||||||||||    
T  3332171 tgactaacggagcaaacgttgagggaccaaattgatgattttagaatttatgggaccaaaatgaaaactgttaattagttgagggaccatttgattaatt 3332270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 44372832 - 44372732
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| || |||||||||||||| | ||||||| | | ||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  44372832 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaactcgaaattagttgagggaccatttgactaat 44372733  T
Q  237 t 237  Q
    |    
T  44372732 t 44372732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 44381688 - 44381588
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| || |||||||||||||| | ||||||| | | ||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  44381688 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaactcgaaattagttgagggaccatttgactaat 44381589  T
Q  237 t 237  Q
    |    
T  44381588 t 44381588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 9081486 - 9081396
Alignment:
Q  147 gagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||| ||||||||| |||| || ||||||||  ||| ||||||| |||||||||||  ||||||||||||||||||||| ||||||||    
T  9081486 gagcaaaagttgagggagcaaattgatgattttatgacttatgggaccaaaatgaaaaccggaaattagttgagggaccattggattaatt 9081396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 17288118 - 17288239
Alignment:
Q  6 aggagcagagagaagatgatgaaaagtg---aagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatn 102  Q
    ||||| ||||||||||||||||||||||   || |||||| ||||||  |||||||| ||| ||||||||||||| ||||||||| |||||||||| ||     
T  17288118 aggagaagagagaagatgatgaaaagtggaaaaaaaattaggtgctgacggttcactattaaatacaatggacatgcaatcaaatagttaaaatcatatc 17288217  T
Q  103 nnnnnntttagacattaaaaaa 124  Q
          ||||||||||||||||    
T  17288218 aaaaaatttagacattaaaaaa 17288239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 29589276 - 29589370
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggac 224  Q
    ||||||||| | |||| ||||||| ||||||||| ||||||| ||||||||| ||| || |||| |||||||||||| | |||||||||||||||    
T  29589276 gaccaaattaaataacggagcaaaagttgagggagcaaaatgatgattttaagacttattggaccaaaatgaaaactgggaattagttgagggac 29589370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 41515234 - 41515115
Alignment:
Q  6 aggagcagagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnn 104  Q
    ||||| ||||||||||| |||||||||||| ||| ||| |||| |  |||||||| ||| ||| ||||||||| |||||||||||||||||||| ||       
T  41515234 aggagaagagagaagattatgaaaagtgaaaaaaattaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaa 41515135  T
Q  105 nnnntttagacattaaaaaa 124  Q
        ||||||||||||||||    
T  41515134 aaactttagacattaaaaaa 41515115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 16755974 - 16755874
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||| ||||||| ||||||| ||||| ||||||| ||||  ||||||   |||||||||||||||||||  ||||||    
T  16755974 ttgaataacggagcaaacgttgagggatcaaaatgatgatttttaaacttatgggaccaaaacaaaaactgagaattagttgagggaccattaaattaat 16755875  T
Q  237 t 237  Q
    |    
T  16755874 t 16755874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 48312691 - 48312766
Alignment:
Q  162 gaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||||||||| ||||||||| | | ||||||| ||||||||||||   ||||||||||| ||||||||||||||||    
T  48312691 gaccaaaatgatgattttaagatttatgggaccaaaatgaaaactgtgaattagttgagagaccatttgattaatt 48312766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 45721653 - 45721763
Alignment:
Q  15 gagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttag 113  Q
    ||||||||||| ||||||||| ||| ||| || |||  |||||| | |||||||||||| |||| |||||||||||||||||||| ||       |||||    
T  45721653 gagaagatgataaaaagtgaaaaaaattaggtactgacggttcattattagatacaatgaacatgcaatcaaatggttaaaatcacataaaaaaatttag 45721752  T
Q  114 acattaaaaaa 124  Q
    |||||||||||    
T  45721753 acattaaaaaa 45721763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 43442672 - 43442844
Alignment:
Q  39 attatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa------ggtgagac 132  Q
    |||| ||||||  |||||||||||| |||||| |||||| ||||||||| |||||||||||||       |||||||||||||| |      |  | |||    
T  43442672 attaggtgctgacggttcactgttaaatacaacggacatgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaagactaacggaggggac 43442771  T
Q  133 caaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    ||||||||||||| |||||||    |||||||||||||| ||||||||  | | ||||||| || ||||||||    
T  43442772 caaattgactaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaatatgaaaac 43442844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 10956079 - 10955968
Alignment:
Q  13 gagagaagatgatgaaaagtgaaga-aattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    |||||||||||||| |||||||| | ||||| |||||   ||| |||| ||| |  ||||||||| ||||||||||||||||||||||||       |||    
T  10956079 gagagaagatgatggaaagtgaaaacaattaggtgctaacggtccactattaaacgcaatggacactcaatcaaatggttaaaatcaaatcaaaaatttt 10955980  T
Q  112 agacattaaaaa 123  Q
    ||||||||||||    
T  10955979 agacattaaaaa 10955968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 35296706 - 35296812
Alignment:
Q  17 gaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagaca 116  Q
    ||||||||||||||||||| |||||| |||||||||| ||| |  ||  || ||||||||| |||||||| ||||||||||| ||       ||||||||    
T  35296706 gaagatgatgaaaagtgaaaaaattaggtgctggtggctca-ttatatgtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagaca 35296804  T
Q  117 ttaaaaaa 124  Q
    ||||||||    
T  35296805 ttaaaaaa 35296812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 48312105 - 48312028
Alignment:
Q  159 agggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    ||||| ||||||| ||||||||| | | ||||||  ||||||| ||||  |||||||||||||||||||| |||||||    
T  48312105 agggatcaaaatgatgattttaagatttatgggatcaaaatgagaactgaaaattagttgagggaccattagattaat 48312028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 28326315 - 28326387
Alignment:
Q  52 ggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa 124  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||||||| ||       ||||||||||||||||    
T  28326315 ggttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaa 28326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 32256458 - 32256499
Alignment:
Q  187 atgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    ||||||| |||||||||||| ||||||| |||||||||||||    
T  32256458 atgggaccaaaatgaaaacttgaaattatttgagggaccatt 32256499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 40811392 - 40811352
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  40811392 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 40811352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 47456439 - 47456479
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  47456439 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 47456479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 6048151 - 6047922
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnttt 111  Q
    ||||||||||||| ||||||  || |||||| ||| || ||||||||| ||||||||||||||| | |||||||||||||| ||||||||       |||    
T  6048151 agagagaagatgaagaaaaggaaaaaaattaggtgttgatggttcactattagatacaatggacctccaatcaaatggttagaatcaaatcaaaaaattt 6048052  T
Q  112 agacattaaaa----aaggt-gagaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaact 206  Q
    || ||||||||    | ||| ||||||||||||| | || ||||||| ||||| ||||||||||| | ||| ||  ||| ||||||| ||||| ||||||    
T  6048051 aggcattaaaaacctacggtagagaccaaattgaatgacggagcaaaagttga-ggaccaaaatgataattataggacttatgggaccaaaattaaaact 6047953  T
Q  207 cgaaattagttgagggaccatttgattaatt 237  Q
     | |||||||||||||| |||||||||||||    
T  6047952 ggtaattagttgagggatcatttgattaatt 6047922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 26803101 - 26803187
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||||||||| |||||| ||| ||  |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  26803101 agagagaagatgatgaaaagtgaaaaaattaggtggtgaaggttcactgttaaatacaatggacatgcaatcaaatggttaaaatca 26803187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 6049430 - 6049537
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccattt 229  Q
    ||||||||||| ||||  |||||| ||||||||||||||||| ||||||||  ||| ||| ||| ||||| |||||| | ||||||||||||||||||||    
T  6049430 gaccaaattgaataacgtagcaaacgttgagggaccaaaatgatgattttaggacttatgagaccaaaataaaaactggtaattagttgagggaccattt 6049529  T
Q  230 gattaatt 237  Q
    ||||||||    
T  6049530 gattaatt 6049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 40110537 - 40110623
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||||||||| |||||| ||| ||  ||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  40110537 agagagaagatgatgaaaagtgaaaaaattaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatca 40110623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 3615357 - 3615250
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccattt 229  Q
    |||||||| || |||  ||||||| ||||||||||||||||| ||||||| | ||| ||||||| |||| |||| ||   ||||||||||||||||||||    
T  3615357 gaccaaatcgaataatggagcaaacgttgagggaccaaaatgatgatttttatacttatgggaccaaaacgaaatctgagaattagttgagggaccattt 3615258  T
Q  230 gattaatt 237  Q
    ||||||||    
T  3615257 gattaatt 3615250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 52076641 - 52076534
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccattt 229  Q
    |||||||| || |||| ||||||| ||||||||||||||||| |||||||   ||| ||||||| |||| |||||||   |||||||||||||| |||||    
T  52076641 gaccaaatcgaataacggagcaaacgttgagggaccaaaatgatgatttttggactaatgggaccaaaacgaaaactgagaattagttgagggatcattt 52076542  T
Q  230 gattaatt 237  Q
    ||||||||    
T  52076541 gattaatt 52076534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 3617510 - 3617610
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||| ||||| ||||||| |||| |||||||   |||||||||||| ||| || |||||||    
T  3617510 ttgaataacggagcaaacgttgagggaccaaaatgatgatttttaaacttatgggaccaaaacgaaaactgagaattagttgaggaaccgttggattaat 3617609  T
Q  237 t 237  Q
    |    
T  3617610 t 3617610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 9226221 - 9226328
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccattt 229  Q
    ||||||||||| |||| ||| ||| ||| |||| ||||| || ||||||||||| | ||||||| ||||||||||||   |||||||||||||||||||     
T  9226221 gaccaaattgaataacggagtaaaagttaaggggccaaattgatgattttaaaatttatgggaccaaaatgaaaactgagaattagttgagggaccattg 9226320  T
Q  230 gattaatt 237  Q
     |||||||    
T  9226321 aattaatt 9226328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 5611836 - 5611740
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggacca 226  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||| |||||||| || | ||||||| |||||||||||   ||||||||| | ||||||    
T  5611836 gaccaaatttactaacagagtaaaagttgaggcaccaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattagttaaaggacca 5611740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 26287790 - 26287865
Alignment:
Q  130 gaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    |||||||||||||||| ||| ||| ||||||||||||||||| ||||||||  | | ||||||| |||||||||||    
T  26287790 gaccaaattgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaac 26287865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 48528777 - 48528868
Alignment:
Q  12 agagagaagatgatgaaaagtgaaga-aattatgtgctggtggttcactgttagatacaatggacattcaatcaaatgg-ttaaaatcaaat 101  Q
    |||||||||||||||||||||||| | ||||| ||| ||  |||||||| ||| ||||||||||||| ||||| ||||| ||||||||||||    
T  48528777 agagagaagatgatgaaaagtgaaaataattaggtgttgacggttcactattaaatacaatggacatgcaatctaatggtttaaaatcaaat 48528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 17190630 - 17190556
Alignment:
Q  163 accaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||| ||||||||||||| || |||  ||||||||||||  ||||||||||| |||| ||||||||||||    
T  17190630 accaaaatgatgattttaaaacttataggatcaaaatgaaaactgaaaattagttgaaggacaatttgattaatt 17190556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 24516568 - 24516479
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggt---ggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||||||||| |||  |   | ||||   ||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  24516568 agagagaagatgatgaaaagtgaaaaaaaaaatagatggtcaaggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatca 24516479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 40533484 - 40533598
Alignment:
Q  12 agagagaagatgatgaaaagtgaaga--aattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnnt 109  Q
    |||||||||||||||||||| ||| |  ||||| |||| |  |||||||| |||  |||||||||||| ||||| |||||||||||||| ||       |    
T  40533484 agagagaagatgatgaaaagcgaaaataaattaggtgccgacggttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagtt 40533583  T
Q  110 ttagacattaaaaaa 124  Q
    |||||||||||||||    
T  40533584 ttagacattaaaaaa 40533598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 5611929 - 5611880
Alignment:
Q  52 ggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||| | ||||| ||||||| |||||||||||||||||||||||    
T  5611929 ggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaat 5611880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 26286515 - 26286426
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggacca 226  Q
    ||||||||| ||||||| ||||||||||||| ||| ||||||||  | | ||||||| |||||||||||   |||||||||  |||||||    
T  26286515 ttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggacca 26286426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 52078126 - 52078207
Alignment:
Q  156 ttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    |||||||| ||||||| ||||||| ||||| ||||||| |||| ||||| |   ||||||||||||||| ||| ||||||||    
T  52078126 ttgagggatcaaaatgatgatttttaaacttatgggaccaaaaagaaaattgagaattagttgagggactattagattaatt 52078207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 5613098 - 5613166
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaac 205  Q
    ||||||||| ||||||| ||||||||||||| ||| ||||||||  | | ||||||| |||||||||||    
T  5613098 ttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaac 5613166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 27556373 - 27556273
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||   | || ||||||||| ||| ||||||| ||||| ||||||   |||||||| ||||||||||| ||||||    
T  27556373 ttgaataacggagcaaaagttgagggactcgattgatgattttaagacttatgggaccaaaataaaaactgagaattagttaagggaccatttaattaat 27556274  T
Q  237 t 237  Q
    |    
T  27556273 t 27556273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 12667156 - 12667246
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa--ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    ||||||||||  |||||||||||| |||  ||| ||||||  |||||||||  | ||||||| ||||| |||||||||| ||||||||||||    
T  12667156 agagagaagacaatgaaaagtgaaaaaaaattaagtgctgacggttcactggaa-atacaatagacatgcaatcaaatgattaaaatcaaat 12667246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 26287711 - 26287747
Alignment:
Q  65 atacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  26287711 atacattggacatacaatcaaatggttaaaatcaaat 26287747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 50444762 - 50444802
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    ||||||||||||||||| | ||||||| |||||||||||||    
T  50444762 tgggactaaaatgaaaatttgaaattatttgagggaccatt 50444802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 52627567 - 52627527
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  52627567 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 52627527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 23233709 - 23233809
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||||| ||| ||||||| |||||||||| | | |||||||||||||||||||||||||||    
T  23233709 ttgaataacggagcaaaagttgagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaatttgtaattagttgagggaccatttgattaat 23233808  T
Q  237 t 237  Q
    |    
T  23233809 t 23233809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 23231625 - 23231543
Alignment:
Q  155 gttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaatt 237  Q
    ||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||    
T  23231625 gttgagggaccaaaatgatgattttaagacttatgggaccaaaataaaaactcgtaattagttgagggaccatttgattaatt 23231543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 4920062 - 4919975
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa--ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    ||||||||||||||||||| |||| |||  |||  ||||| ||||||||| | || || ||||||||| |||||||| |||||||||||    
T  4920062 agagagaagatgatgaaaaatgaacaaaaattagatgctgatggttcactat-aggtataatggacatgcaatcaaacggttaaaatca 4919975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 42368230 - 42368279
Alignment:
Q  49 ggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    ||||||||||||||| ||||| ||||| | |||||||| |||||||||||    
T  42368230 ggtggttcactgttatatacagtggacttacaatcaaacggttaaaatca 42368279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 25570000 - 25569916
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaat 96  Q
    ||||||||||||| ||||| |  | |||| | |||||| ||||||||| ||| |||| || ||||| ||||||| ||||||||||    
T  25570000 agagagaagatgaagaaaactataaaaatcaagtgctgatggttcactcttaaatactatagacatgcaatcaagtggttaaaat 25569916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 10736819 - 10737028
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntt 110  Q
    ||||||||||||||| |||||||| ||| ||| ||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||||       ||    
T  10736819 agagagaagatgatggaaagtgaaaaaaattaagtgttgacggttcactattagatacaatggacattcaatcaaatggttaaaatcaaatcaaaaattt 10736918  T
Q  111 tagacattaaaaa------aggtgagaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaa 204  Q
    |||||||||||||       |  | ||||||||||| |||| |||||||    |||||||||||||| ||||||||  | | ||||||| ||||||||||    
T  10736919 tagacattaaaaagttaacggaggggaccaaattgattaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaa 10737018  T
Q  205 ctcgaaatta 214  Q
    |  |||||||    
T  10737019 caagaaatta 10737028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 9220473 - 9220573
Alignment:
Q  137 ttgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatttgattaat 236  Q
    |||| |||||||||||| |||||||||||||||| ||||||| || ||| ||||||  |||||||||||| |||||||||||||||||||||  ||||||    
T  9220473 ttgaataacagagcaaaagttgagggaccaaaattctgatttcaagacttatgggaacaaaatgaaaactggaaattagttgagggaccattgaattaat 9220572  T
Q  237 t 237  Q
    |    
T  9220573 t 9220573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 8188098 - 8188197
Alignment:
Q  24 atgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaa 123  Q
    |||||||||||| |||||| ||| || ||||||||  ||| ||| ||||||||| |||||||||||||||||||| ||       |||||||||||||||    
T  8188098 atgaaaagtgaa-aaattaggtgttgatggttcaccattaaatataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaa 8188196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 4124990 - 4124902
Alignment:
Q  15 gagaagatgatgaaaagtgaaga--aattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||||||||| |||| |  ||| | ||||||  |||||||| ||| |||||||||| || |||||||||||||||||| ||||    
T  4124990 gagaagatgatgaaaaatgaaaattaatcaggtgctgacggttcactattaaatacaatggatatacaatcaaatggttaaaattaaat 4124902  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 9170774 - 9170858
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaat 96  Q
    |||| ||||||||||||||||||| ||| ||| |||||| ||||| ||  | ||||| ||||||||| ||||||||||||||||||    
T  9170774 agagggaagatgatgaaaagtgaaaaaaattaagtgctgatggtttaccat-agatataatggacatgcaatcaaatggttaaaat 9170858  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 9219370 - 9219298
Alignment:
Q  52 ggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa 124  Q
    |||||||| ||| |||||||| |||| |||||||| ||||||||||||||       ||||||||||||||||    
T  9219370 ggttcactattaaatacaatgaacatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaa 9219298  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 1103849 - 1103939
Alignment:
Q  12 agagagaagatgatgaaaagtgaaga-aattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    ||||||||||||||||||||| || | ||||| ||| ||  |||| ||| ||| ||||||||| |||  |||| |||||||||||||||||    
T  1103849 agagagaagatgatgaaaagtaaaaataattaggtgttgacggttaactattaaatacaatgggcatgtaatctaatggttaaaatcaaat 1103939  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 325249 - 325289
Alignment:
Q  188 tgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  325249 tgggaccaaaatgaaaacttgaaattatttgagggaccatt 325289  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 18242217 - 18242414
Alignment:
Q  37 aaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaatnnnnnnntttagacattaaaaaa------ggtgag 130  Q
    |||||| ||| || ||||||||| | | ||||||||||||| |||||||||||||||||| ||||       || |||||||||||||      |  | |    
T  18242217 aaattaggtgatgatggttcactataaaatacaatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggagggg 18242316  T
Q  131 accaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaactcatgggactaaaatgaaaactcgaaattagttgagggaccatt 228  Q
    || ||||||| |||  ||||||| |||||||||||||| || ||||||||| ||| ||||||| | ||| |||| |  ||||||||||||||||||||    
T  18242317 acgaaattgaataatggagcaaaagttgagggaccaaattgatgattttaagacttatgggaccagaataaaaattaaaaattagttgagggaccatt 18242414  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 18240502 - 18240418
Alignment:
Q  138 tgactaacagagcaaatgttgagggaccaaaatgctga-ttttaaaactcatgggactaaaatgaaaactcgaaattagttgagg 221  Q
    |||||||||||||||| |||||||||||||| || ||| |||||| ||  ||||||  ||||||||||||  |||||||||||||    
T  18240502 tgactaacagagcaaaagttgagggaccaaattgatgatttttaagacatatgggatcaaaatgaaaactgaaaattagttgagg 18240418  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 11968349 - 11968438
Alignment:
Q  12 agagagaagatgatgaaaagtgaagaaa-ttatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatcaaat 101  Q
    |||||||||||||||||||||||| ||| |||  || || ||||||| ||| | ||| ||| ||||| |||||||||||||||||||||||    
T  11968349 agagagaagatgatgaaaagtgaaaaaaattagatgttgatggttca-tgtaaaatataatagacatgcaatcaaatggttaaaatcaaat 11968438  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 29675683 - 29675622
Alignment:
Q  37 aaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||| || |||| |||| ||||||||||||||| | ||||| | ||||||||||||    
T  29675683 aaattatgtggtgatggtgcactattagatacaatggacctgcaatccagtggttaaaatca 29675622  T

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Target: scaffold0219 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 7124 - 7044
Alignment:
Q  16 agaagatgatgaaaagtgaagaaattatgtgctggtggttcactgttagatacaatggacattcaatcaaatggttaaaat 96  Q
    |||||||||||||||| ||| |||||| ||| ||  |||||||| ||| ||| ||||||||| |||||||| |||||||||    
T  7124 agaagatgatgaaaagcgaaaaaattaggtgttgacggttcactattaaatataatggacatgcaatcaaacggttaaaat 7044  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 6497 - 6534
Alignment:
Q  61 ttagatacaatggacattcaatcaaatggttaaaatca 98  Q
    |||||||||||||||||  |||||||||||||||||||    
T  6497 ttagatacaatggacatagaatcaaatggttaaaatca 6534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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