View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10291_low_21 (Length: 244)
Name: NF10291_low_21
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10291_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 884797 - 884587
Alignment:
| Q |
3 |
aatgtaatttgtaaggatcggagtttaaactctgaattctccatgtattcgtattcatcttaagaataaatttgtagtcactaaataattttataaagca |
102 |
Q |
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| T |
884797 |
aatgtagtttgtaaggat---agtttaaactctgaattctccatgtattcgtattcatcttaagaataaatttgtagtcactaaataattttataaagca |
884701 |
T |
|
| Q |
103 |
aatacaataataatataaaagatgtgtcatttcatgaaaaggatctttagtttacaaggttgatcaatcccaccatgtgtatttttattatctctagtca |
202 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
884700 |
aatacaataataatataaaagatgtgtcatttcaagaaaaggatctttagtttacaaggttgatcaatcccactatgtgtatttttattatctctagtca |
884601 |
T |
|
| Q |
203 |
attatcgaataagt |
216 |
Q |
| |
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|||||||||||||| |
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| T |
884600 |
attatcgaataagt |
884587 |
T |
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