View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10291_low_25 (Length: 209)

Name: NF10291_low_25
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10291_low_25
NF10291_low_25
[»] chr1 (2 HSPs)
chr1 (137-193)||(6261146-6261202)
chr1 (14-71)||(6261011-6261068)
[»] scaffold0316 (1 HSPs)
scaffold0316 (14-53)||(17244-17283)
[»] chr7 (2 HSPs)
chr7 (14-53)||(12311045-12311084)
chr7 (14-53)||(2318161-2318200)
[»] chr2 (1 HSPs)
chr2 (14-53)||(3440120-3440159)
[»] chr8 (1 HSPs)
chr8 (14-53)||(15258849-15258888)
[»] chr6 (1 HSPs)
chr6 (14-53)||(31110681-31110720)
[»] chr4 (1 HSPs)
chr4 (14-53)||(50052348-50052387)
[»] chr3 (4 HSPs)
chr3 (14-53)||(26754836-26754875)
chr3 (14-53)||(48375626-48375665)
chr3 (19-53)||(26141450-26141484)
chr3 (19-53)||(41189684-41189718)


Alignment Details
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 6261146 - 6261202
Alignment:
Q  137 tagtagttaagaagtgttcaaaaatggcactgaacgatttcttcgccggagaaattg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6261146 tagtagttaagaagtgttcaaaaatggcactgaacgatttcttcgccggagaaattg 6261202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 6261011 - 6261068
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacattttgcaagggcaatatagtcc 71  Q
    |||||||||||| ||||||| || || ||||||||||||| |||||||||||||||||    
T  6261011 caaaggtgtatgaaaataaatggtgtgtatgtaacattttccaagggcaatatagtcc 6261068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 17244 - 17283
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  17244 caaaggtgtatggaaataaagggtgtctatgtaacatttt 17283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 12311045 - 12311084
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  12311045 caaaggtgtatggaaataaagggtgtctatgtaacatttt 12311084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 2318200 - 2318161
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  2318200 caaaggtgtatggaaataaagtgtgtctatgtaacatttt 2318161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 3440120 - 3440159
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  3440120 caaaggtgtatggaaataaagggtgtctatgtaacatttt 3440159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 15258888 - 15258849
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  15258888 caaaagtgtatggaaataaagggtgtctatgtaacatttt 15258849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 31110720 - 31110681
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  31110720 caaaggtgtatggaaataaaggatgtctatgtaacatttt 31110681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 50052387 - 50052348
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  50052387 caaaggtgtatgggaataaagggtgtctatgtaacatttt 50052348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 26754836 - 26754875
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  26754836 caaaggtgtatggaaataaagagtgtctatgtaacatttt 26754875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 48375665 - 48375626
Alignment:
Q  14 caaaggtgtatggaaataaagggggtctatgtaacatttt 53  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  48375665 caaagatgtatggaaataaagggtgtctatgtaacatttt 48375626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 26141484 - 26141450
Alignment:
Q  19 gtgtatggaaataaagggggtctatgtaacatttt 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  26141484 gtgtatggaaataaagggtgtctatgtaacatttt 26141450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 41189718 - 41189684
Alignment:
Q  19 gtgtatggaaataaagggggtctatgtaacatttt 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  41189718 gtgtatggaaataaagggtgtctatgtaacatttt 41189684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University