View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10291_low_5 (Length: 391)
Name: NF10291_low_5
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10291_low_5 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 381
Target Start/End: Original strand, 44112313 - 44112673
Alignment:
| Q |
21 |
attaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatggact |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112313 |
attaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatggact |
44112412 |
T |
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| Q |
121 |
agggttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttttacatgatgagtttaactttcaacttacctatgagaagaagc |
220 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112413 |
agggttcaacacaacgttgctcctgctgttgttgactgggttgttccctgaccatttttacatgatgagtttaactttcaacttacctatgagaagaagc |
44112512 |
T |
|
| Q |
221 |
ttggttatgaggacgttacctctagcttgctggtatgctttgattcattttacgtgttataagagtaagacttggtgtaaataactaatcatatttaact |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112513 |
ttggttatgaggacgttacctctagcttgctggtatgctttgattcattttacgtgttataagagtaagacttggtgtaaataactaatcatatttaact |
44112612 |
T |
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| Q |
321 |
aatcaaatgttttgtaatgttgaaaacattaacgaattgtgtttgttaacttttgcctatg |
381 |
Q |
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| T |
44112613 |
aatcaaatgttctgtaatgttgaaaacattaacgaattgtgtttgttaacttttgcctatg |
44112673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 7406 - 7198
Alignment:
| Q |
27 |
attgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatggact--aggg |
124 |
Q |
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||||| |||||||| ||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| ||||| ||||| | | || |
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| T |
7406 |
attgtctggatgggagatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccaccaatggaattcaagg |
7307 |
T |
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| Q |
125 |
ttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttttacatgatgagtttaactttcaacttacctatgagaagaagcttgg |
224 |
Q |
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|| | | |||||||| ||| | ||||||||||||| ||||||| ||| ||| | |||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
7306 |
ttgagcccaatgttgttccggttgttgttgactggtttgttccccaaccttttatgcatgatgagtataactttcagcttacctatgagaagaagcttgg |
7207 |
T |
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| Q |
225 |
ttatgagga |
233 |
Q |
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||||||||| |
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| T |
7206 |
ttatgagga |
7198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 38896585 - 38896377
Alignment:
| Q |
21 |
attaccattgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatggact |
120 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| ||||| ||||| | |
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| T |
38896585 |
attacaattgtctggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccaccaatggaat |
38896486 |
T |
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| Q |
121 |
--agggttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttt-tacatgatgagtttaactttcaacttacctatgagaaga |
217 |
Q |
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| |||| | | ||||| || ||| | ||||||||||||| ||||||| ||| |||| | |||||||||| ||||||||| |||||||||||||||| |
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| T |
38896485 |
tcaaggttgagcccaatgctgttccggttgttgttgactggtttgttccccaacctttttatgcatgatgagtataactttcagcttacctatgagaaga |
38896386 |
T |
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| Q |
218 |
agcttggtt |
226 |
Q |
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||||||||| |
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| T |
38896385 |
agcttggtt |
38896377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 24324676 - 24324884
Alignment:
| Q |
27 |
attgtttggatggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaacttttactccacctatggact--aggg |
124 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||| || ||||||||||| | |||| |||| |||||||| ||||| ||||| ||||| | | || |
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| T |
24324676 |
attgtctggatggggaatggaaggtttgatattcgagtaaagaataggtttggtaggagggttcgttacccaacatttacgccaccaatggaattcaagg |
24324775 |
T |
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| Q |
125 |
ttcaacacaatgttgctcctgctgttgttgactgggttgttccttgaccatttttacatgatgagtttaactttcaacttacctatgagaagaagcttgg |
224 |
Q |
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|| | | |||||||| ||| | ||||||||||||| ||||||| || ||| | |||||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
24324776 |
ttgagcccaatgttgttccggttgttgttgactggtttgttccccagccttttatgcatgatgagtataactttcaacttacatatgagaagaaacttgg |
24324875 |
T |
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| Q |
225 |
ttatgagga |
233 |
Q |
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|| |||||| |
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| T |
24324876 |
ttgtgagga |
24324884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 13102775 - 13102706
Alignment:
| Q |
36 |
atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta |
105 |
Q |
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||||| |||||||||||| |||||||| |||| || |||||||| ||||| ||||| |||||||| |||| |
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| T |
13102775 |
atgggaaatggaaggtttaatattagaatcaagaacaggtttggtaagagaattcgttacccaaccttta |
13102706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 2269524 - 2269460
Alignment:
| Q |
36 |
atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaac |
100 |
Q |
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||||| ||||||||||||||||||| | |||| || |||||||| ||||| ||||| |||||||| |
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| T |
2269524 |
atgggaaatggaaggtttgatattataatcaagaacaggtttggtaagagaattcgttacccaac |
2269460 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 16797450 - 16797519
Alignment:
| Q |
36 |
atggggaatggaaggtttgatattagagtcaaaaataggtttggaaagaggattcgctacccaactttta |
105 |
Q |
| |
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||||| ||||||||||||||||||||| |||| || | |||||| || || ||||| |||||||| |||| |
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| T |
16797450 |
atgggaaatggaaggtttgatattagaatcaagaacatgtttggtaatagaattcgttacccaaccttta |
16797519 |
T |
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