View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10291_low_6 (Length: 379)

Name: NF10291_low_6
Description: NF10291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10291_low_6
NF10291_low_6
[»] chr2 (37 HSPs)
chr2 (14-360)||(12019044-12019391)
chr2 (14-339)||(12012729-12013054)
chr2 (14-360)||(11987643-11987992)
chr2 (14-360)||(12006274-12006598)
chr2 (14-314)||(9315644-9315959)
chr2 (23-314)||(9284392-9284703)
chr2 (138-342)||(9291686-9291890)
chr2 (150-360)||(9320758-9320968)
chr2 (137-356)||(9328363-9328581)
chr2 (200-314)||(8573728-8573842)
chr2 (200-309)||(10335682-10335791)
chr2 (150-314)||(9061361-9061522)
chr2 (14-124)||(9320596-9320709)
chr2 (14-120)||(9364242-9364351)
chr2 (14-103)||(9291563-9291655)
chr2 (143-309)||(10352878-10353044)
chr2 (216-314)||(10371679-10371777)
chr2 (200-342)||(9065788-9065930)
chr2 (151-309)||(9274277-9274435)
chr2 (200-340)||(10347587-10347730)
chr2 (200-360)||(9364454-9364614)
chr2 (14-113)||(8573931-8574035)
chr2 (205-314)||(10341180-10341292)
chr2 (79-140)||(9328283-9328344)
chr2 (255-314)||(7115847-7115906)
chr2 (145-268)||(7115917-7116040)
chr2 (14-69)||(10352735-10352790)
chr2 (75-138)||(10371528-10371591)
chr2 (27-69)||(9274200-9274242)
chr2 (27-140)||(9061556-9061675)
chr2 (258-342)||(16268952-16269036)
chr2 (14-69)||(9066083-9066138)
chr2 (32-241)||(9294915-9295144)
chr2 (210-275)||(8579746-8579811)
chr2 (14-69)||(19393261-19393321)
chr2 (14-44)||(9328225-9328255)
chr2 (28-69)||(10341038-10341079)
[»] chr3 (1 HSPs)
chr3 (14-342)||(37462095-37462436)
[»] chr8 (2 HSPs)
chr8 (205-309)||(41966915-41967019)
chr8 (14-118)||(41967132-41967239)
[»] chr1 (7 HSPs)
chr1 (14-314)||(29422938-29423205)
chr1 (14-138)||(29443693-29443828)
chr1 (17-138)||(29453676-29453799)
chr1 (210-314)||(29453506-29453610)
chr1 (210-309)||(29467987-29468086)
chr1 (213-280)||(29443557-29443624)
chr1 (34-69)||(29468238-29468273)
[»] scaffold0667 (2 HSPs)
scaffold0667 (150-342)||(4229-4418)
scaffold0667 (14-138)||(4070-4197)
[»] chr7 (3 HSPs)
chr7 (206-314)||(45230240-45230348)
chr7 (206-278)||(45243501-45243574)
chr7 (210-278)||(45237762-45237830)
[»] chr4 (3 HSPs)
chr4 (18-69)||(26574525-26574576)
chr4 (216-309)||(26574700-26574793)
chr4 (195-269)||(561004-561078)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 12019391 - 12019044
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaatacattaacatagagtttaactacatatatcatatgatgggtc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12019391 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaatacattaacatagagtttaactacatatatcatatgatgggtc 12019292  T
Q  114 cattgaattg-atgttaacttatacataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaag 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  12019291 cattgaattggatgttaacttatacataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaag 12019192  T
Q  213 gaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaacca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12019191 gaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaacca 12019092  T
Q  313 gcatattatgatttacatccaacaaaaccttttttccatcactcgaat 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12019091 gcatattatgatttacatccaacaaaaccttttttccatcactcgaat 12019044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 12013054 - 12012729
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   ||||||| |||| |||||||||||||||||||||||    
T  12013054 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatatatcatatgatgg 12012955  T
Q  111 gtccattgaattgatgttaacttatacataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggta 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |  |||| ||||| |   |  || |||| |||| |    
T  12012954 gtccattgaattgatattaacttatacataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacaggga 12012855  T
Q  211 aggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaac 310  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||    
T  12012854 aggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaact---tgactcttcaaatcataccaaac 12012758  T
Q  311 cagcatattatgatttacatccaacaaaa 339  Q
    |||| | ||||||||||| ||||||||||    
T  12012757 cagcttcttatgatttacctccaacaaaa 12012729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 11987992 - 11987643
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgg 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |  |   |||||||| ||||||||||||||||||| |||||||    
T  11987992 caaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatgatgg 11987893  T
Q  111 gtccattgaattgatgttaacttatacataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggta 210  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |  |||| ||||| |   |  || |||| |||| |    
T  11987892 gtccattgaattgatattaacttatacataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacaggga 11987793  T
Q  211 aggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaac 310  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| | ||| | |||||||||||||||||||||    
T  11987792 aggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaac 11987693  T
Q  311 cagcatattatgatttacatccaacaaaaccttttttccatcactcgaat 360  Q
    |||| | || ||||| | |||||||||||||||||| |||||||||||||    
T  11987692 cagcttcttgtgattaagatccaacaaaacctttttaccatcactcgaat 11987643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 12006598 - 12006274
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaatacattaacatagagtttaactacatatatcatatgatgggtc 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||                      ||||||||||||    
T  12006598 caaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaaatacattaac----------------------atatgatgggtc 12006521  T
Q  114 cattgaattgatgttaacttatacataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaagg 213  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |   |  ||  ||| |||| ||||    
T  12006520 cattgaattgatattaacttatacataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaagg 12006421  T
Q  214 aaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccag 313  Q
    ||||  ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||  ||| | ||||  | ||||||||||||||||||||||||    
T  12006420 aaggcagtacaagacttccaacacaaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccag 12006321  T
Q  314 catattatgatttacatccaacaaaaccttttttccatcactcgaat 360  Q
    | | ||||||||||| || |||||||  |||||||||||||| ||||    
T  12006320 cttcttatgatttacctcaaacaaaagtttttttccatcacttgaat 12006274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 9315644 - 9315959
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgg 110  Q
    |||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |  |   ||| |||||||||||||||| |||||||||||||||    
T  9315644 caaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatgatgg 9315743  T
Q  111 gtccattgaattgatgttaacttatacata-----------atcaata-agaagtaccttctcttgctcttccttgtaccattctccttcgtatgattat 198  Q
    |||||||||| |||  ||||||||||||||           |  |||| | ||||||||||||||| |||| ||||||  |||||||||| |   |  ||    
T  9315744 gtccattgaactgacattaacttatacatagcaaaaactcaaataatatataagtaccttctcttgttcttgcttgtatgattctccttcttcctacaat 9315843  T
Q  199 catcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaa 298  Q
     |||| |||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||||||| | ||||| | |||| ||||    
T  9315844 aatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaa 9315943  T
Q  299 atcataccaaaccagc 314  Q
     ||| |||||| ||||    
T  9315944 gtcacaccaaaacagc 9315959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 314
Target Start/End: Complemental strand, 9284703 - 9284392
Alignment:
Q  23 agacttcaaagtaattagagaatccttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgggtccattga 119  Q
    |||| ||||||||||| |||| ||||||||| ||||||||||||||| |  |   |||| ||| |||||||||||||| || |||||||||||||||| |    
T  9284703 agacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccattaa 9284604  T
Q  120 attgatgttaacttataca----------------taatcaataa-gaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatc 202  Q
    | | |  ||||||||||||                |||||||||| ||||||||||||||||||||| |||  || |||||||||| ||  |  || |||    
T  9284603 actaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatc 9284504  T
Q  203 agcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatca 302  Q
    | |||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||    
T  9284503 aacagggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatca 9284404  T
Q  303 taccaaaccagc 314  Q
    ||||||||||||    
T  9284403 taccaaaccagc 9284392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 342
Target Start/End: Original strand, 9291686 - 9291890
Alignment:
Q  138 ataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacac 237  Q
    ||||||||||||||||||| | |||| |||||  | |||  |||||||||| |   |  || |||| |||| ||||||||||||| ||||||| ||||||    
T  9291686 ataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacac 9291785  T
Q  238 aaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaa 337  Q
    ||||||| |||||||| |||||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||| |  |||||||||| ||||||||    
T  9291786 aaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgatttacctccaacaa 9291885  T
Q  338 aacct 342  Q
    |||||    
T  9291886 aacct 9291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 360
Target Start/End: Original strand, 9320758 - 9320968
Alignment:
Q  150 aagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggctt 249  Q
    |||||||||||| ||||||| ||||||| |||||||||| | | |  || |||| |||| ||||||||||| ||||||||||||||||||| |||  ||     
T  9320758 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactc 9320857  T
Q  250 catcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaaaaccttttttcc 349  Q
    ||| ||||| ||||||||||||||||||||| |||||   |||||||||||||||||||| |||| | | |  || |||   ||||||||||||||||||    
T  9320858 catggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctaccctcaacaaaaccttttttcc 9320957  T
Q  350 atcactcgaat 360  Q
    |||||||||||    
T  9320958 atcactcgaat 9320968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 356
Target Start/End: Original strand, 9328363 - 9328581
Alignment:
Q  137 cataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaaca 236  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |   |  || |||| |||| |||||||||||||||||||||||||||    
T  9328363 cataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaaca 9328461  T
Q  237 caaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaaca 336  Q
     ||| |||  | |||| ||||| ||||||||||||||||||||| |||||   |||| | ||||||||| ||| |||| | | |  ||  ||   |||||    
T  9328462 gaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatccaccctcaaca 9328561  T
Q  337 aaaccttttttccatcactc 356  Q
    ||||||||||||||||||||    
T  9328562 aaaccttttttccatcactc 9328581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 8573842 - 8573728
Alignment:
Q  200 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaa 299  Q
    |||| |||| ||| ||||||||||||||||||||||||||| ||| ||| |||   ||||||||||||||||||||||||||||||| | ||||||||||    
T  8573842 atcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaattccttcaacataactgacttgttcactcttcaaa 8573743  T
Q  300 tcataccaaaccagc 314  Q
    |||||||||| ||||    
T  8573742 tcataccaaaacagc 8573728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 10335682 - 10335791
Alignment:
Q  200 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaa 299  Q
    |||| |||||||||||||||  ||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||||| | ||| | ||||||||||    
T  10335682 atcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaaa 10335781  T
Q  300 tcataccaaa 309  Q
    ||||||||||    
T  10335782 tcataccaaa 10335791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 314
Target Start/End: Complemental strand, 9061522 - 9061361
Alignment:
Q  150 aagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggctt 249  Q
    ||||||||||||||| |||| ||||||| |||||||||| ||  | ||||| |||   | ||| |||||| ||| |||||||||||| ||| ||| ||||    
T  9061522 aagtaccttctcttggtcttgcttgtacgattctccttcttacaagtatcaacag---ggaagaaaggtgatacgagacttccaacataaaacatagctt 9061426  T
Q  250 catcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagc 314  Q
    |||| |||||||||||||||||||||||||| ||||| | |||||| | ||||||||||| ||||    
T  9061425 catcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagc 9061361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 9320596 - 9320709
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaat--acat-taacatagagtttaactacatatatcatatgatgg 110  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |  || | || ||||||||||||||  ||||||||||||||||    
T  9320596 caaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacctatagcatagagtttaacttaatatatcatatgatgg 9320695  T
Q  111 gtccattgaattga 124  Q
    ||||||||||||||    
T  9320696 gtccattgaattga 9320709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 9364242 - 9364351
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaat---acattaacatagagtttaactacatatatcatatgatgg 110  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |    | |||| ||||||||||| |||||||||||||||||||    
T  9364242 caaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgg 9364341  T
Q  111 gtccattgaa 120  Q
    || |||||||    
T  9364342 gttcattgaa 9364351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 9291563 - 9291655
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa---atacattaacatagagtttaactacatatatcat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  | ||| |||||||||||||||||| ||||||    
T  9291563 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 309
Target Start/End: Original strand, 10352878 - 10353044
Alignment:
Q  143 caataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatc 242  Q
    |||||||||||||||| ||| |||||  ||||||  |||||||| | |   |  || |||| |||| ||| |||||||||||||||||||||||||||||    
T  10352878 caataagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatc 10352977  T
Q  243 atggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaa 309  Q
    || |  ||||| |||||| ||||| ||| ||||||||| ||||| | ||||| ||||||||||||||    
T  10352978 atagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaa 10353044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 10371679 - 10371777
Alignment:
Q  216 ggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagc 314  Q
    |||||||||||||| |||||||||| ||| || ||||| ||||||| | |||||||||||||||| ||||| | |||||||||||||||||||| ||||    
T  10371679 ggtggtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagc 10371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 342
Target Start/End: Complemental strand, 9065930 - 9065788
Alignment:
Q  200 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaa 299  Q
    |||| |||| ||||||| ||||||||||||| ||||||||||||  |  ||||   ||||||||| ||||||||||||| | ||||| | ||||||||||    
T  9065930 atcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttcaaa 9065831  T
Q  300 tcataccaaaccagcatattatgatttacatccaacaaaacct 342  Q
    ||||||||||  ||| | | ||||| ||| |||||||||||||    
T  9065830 tcataccaaaagagcttctgatgatctacctccaacaaaacct 9065788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 309
Target Start/End: Original strand, 9274277 - 9274435
Alignment:
Q  151 agtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttc 250  Q
    |||||||| |||||||||| ||||||  |||||||||| |   |  || |||| |||| ||||| |||||||||| ||||||||| ||||| || | | |    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttcc 9274376  T
Q  251 atcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaa 309  Q
    || ||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||    
T  9274377 attgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaa 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 10347587 - 10347730
Alignment:
Q  200 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaatt---aggaattccttcaacataactgacttgctgactcttc 296  Q
    |||| |||| ||||||||||| ||||||||||||||||||| ||| | |||||  | |||   ||||||||||||||||||||| | ||| | |||||||    
T  10347587 atcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggaggaattccttcaacataactaatttgttcactcttc 10347686  T
Q  297 aaatcataccaaaccagcatattatgatttacatccaacaaaac 340  Q
    ||||||||||||| |||| |  |||| | ||| |||||||||||    
T  10347687 aaatcataccaaaacagcttcctatgttgtacctccaacaaaac 10347730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 360
Target Start/End: Original strand, 9364454 - 9364614
Alignment:
Q  200 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaa 299  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||| |||||||  | |||||||||||||  ||||  | | || |  | |||||| | |    
T  9364454 atcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgaga 9364553  T
Q  300 tcataccaaaccagcatattatgatttacatccaacaaaaccttttttccatcactcgaat 360  Q
    || ||||||| |||| | ||| ||| ||  ||||| |||||||| ||||||||||||||||    
T  9364554 tcgtaccaaaacagcttcttacgatctatttccaataaaaccttctttccatcactcgaat 9364614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 8574035 - 8573931
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtccta--taataagaattcaaat---acattaacatagagtttaactacatatatcatatgat 108  Q
    |||||||| | |||||||||||||||||||||||||||||||  | ||||||||| || |    | ||| ||||||||||||| ||||||||||||||||    
T  8574035 caaaggtataaacttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccacatatatcatatgat 8573936  T
Q  109 gggtc 113  Q
    |||||    
T  8573935 gggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 10341180 - 10341292
Alignment:
Q  205 caggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaac---ataactgacttgctgactcttcaaatc 301  Q
    |||| ||| |||||||||| | |||||||||||| ||||| || ||||| |||| |||||||||||||||   |||||| ||||| | ||||| ||||||    
T  10341180 cagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaattccttcaacataataactaacttgttcactctccaaatc 10341279  T
Q  302 ataccaaaccagc 314  Q
    |||||||| ||||    
T  10341280 ataccaaaacagc 10341292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 9328283 - 9328344
Alignment:
Q  79 catagagtttaactacatatatcatatgatgggtccattgaattgatgttaacttatacata 140  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||  | ||||||||||||    
T  9328283 catagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacata 9328344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 7115906 - 7115847
Alignment:
Q  255 aaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagc 314  Q
    ||||||||||||||||||||| |||| ||||| |  ||||||||||||||||||||||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagc 7115847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 7116040 - 7115917
Alignment:
Q  145 ataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatcat 244  Q
    ||||||||||||||||||||||||| ||||||  |||||||||| |   |  || |||| |||| ||||||||||||||||| ||| ||| ||||||||     
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatcaa 7115941  T
Q  245 ggcttcatcgaaattaggaattcc 268  Q
     ||| |||  |||||| |||||||    
T  7115940 agctccattcaaattacgaattcc 7115917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 10352735 - 10352790
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 69  Q
    |||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||    
T  10352735 caaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 10352790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 10371528 - 10371591
Alignment:
Q  75 ttaacatagagtttaactacatatatcatatgatgggtccattgaattgatgttaacttataca 138  Q
    |||||| ||||||||||| ||||||| ||||||||| ||||||||| |||| ||||||||||||    
T  10371528 ttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttataca 10371591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 9274200 - 9274242
Alignment:
Q  27 ttcaaagtaattagagaatccttgtcctataataagaattcaa 69  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaa 9274242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 9061675 - 9061556
Alignment:
Q  27 ttcaaagtaattagagaatc-----cttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgggtccattg 118  Q
    ||||||||||||||||||||     |||||||||||| |||||||||| |  |   ||| |||||||||||||||||||||| |||||||||  ||||||    
T  9061675 ttcaaagtaattagagaatcaaatccttgtcctataacaagaattcaatttaacctttagcatagagtttaactacatatattatatgatgg--ccattg 9061578  T
Q  119 aattgatgttaacttatacata 140  Q
    || |||  | ||||||||||||    
T  9061577 aactgacatcaacttatacata 9061556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 16268952 - 16269036
Alignment:
Q  258 ttaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaaaacct 342  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||||||||| || | | |||| ||  || |||||||||||||    
T  16268952 ttaggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttcttataatgcacgtccaacaaaacct 16269036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 9066138 - 9066083
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 69  Q
    |||||||||| |||||||||||||||||||||| || |||||| |||||| |||||    
T  9066138 caaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaa 9066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 9295144 - 9294915
Alignment:
Q  32 agtaattagagaatccttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgggtccattgaattgatgtt 128  Q
    ||||||||||||| || ||||||||||||||||||||| |  |   ||| ||||||||||||| ||||| || |||||||||||||||| || | |  ||    
T  9295144 agtaattagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaatt 9295045  T
Q  129 aacttataca----------------taatcaataa-gaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaa 211  Q
    ||||||||||                |||||||||| ||||||||||||||||||||| |||  || |||||||||| ||  |  || |||| |||| ||    
T  9295044 aacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaa 9294945  T
Q  212 ggaaggtggtacaagacttccaacacaaat 241  Q
    |||||||| ||| |||||| ||||| ||||    
T  9294944 ggaaggtgctacgagactttcaacataaat 9294915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 8579811 - 8579746
Alignment:
Q  210 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaaca 275  Q
    ||||||||||||| |||  |||||||| ||||||| | ||||| ||||||||||||||||| ||||    
T  8579811 aaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaaca 8579746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19393321 - 19393261
Alignment:
Q  14 caaaggtagagacttcaaagtaattagag-----aatccttgtcctataataagaattcaa 69  Q
    ||||||| |||||||||||||||||||||     ||||||| |||||||||||||||||||    
T  19393321 caaaggttgagacttcaaagtaattagagaatctaatccttttcctataataagaattcaa 19393261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 9328225 - 9328255
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaa 44  Q
    |||||||||||||||||||||||||||||||    
T  9328225 caaaggtagagacttcaaagtaattagagaa 9328255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 10341038 - 10341079
Alignment:
Q  28 tcaaagtaattagagaatccttgtcctataataagaattcaa 69  Q
    |||| ||||||||||||||||| |||||| ||||||||||||    
T  10341038 tcaaggtaattagagaatccttatcctatgataagaattcaa 10341079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 37462095 - 37462436
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaataca----ttaacatagagtttaactacatatatcatatgatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |  |    ||| ||||||  |||||||||||||||||||||||    
T  37462095 caaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatg 37462194  T
Q  110 ggtccattgaattgatgttaacttatacataa-------tcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatc 202  Q
    |||||| |||| | |    |||||||||||||       |||| ||||| ||||||||||||||||| ||||| |  | ||||||| |   |  || |||    
T  37462195 ggtccaatgaactaacagaaacttatacataacaaaaactcaa-aagaaataccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatc 37462293  T
Q  203 agcaggtaaggaaggtggtacaagacttccaacacaaatcatggc---ttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaa 299  Q
    | |||| || | ||||| |||||||||| ||||||||||||| ||   | |||  |||||||||| |||||||| |||||| ||||| | ||||||| ||    
T  37462294 aacagggaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaa 37462393  T
Q  300 tcataccaaaccagcatattatgatttacatccaacaaaacct 342  Q
    |||||||||| |||| |  | |||| ||| | |||||||||||    
T  37462394 tcataccaaaacagctttctgtgatctaccttcaacaaaacct 37462436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 41967019 - 41966915
Alignment:
Q  205 caggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcata 304  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | | ||| | |||||||||||||||    
T  41967019 cagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcata 41966920  T
Q  305 ccaaa 309  Q
    |||||    
T  41966919 ccaaa 41966915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 41967239 - 41967132
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa---atacattaacatagagtttaactacatatatcatatgatgg 110  Q
    |||||||| || |||| |||||||||||||||  || |||||||||||||||||||   |  | |||||||||||||||| ||||| |||  ||||||||    
T  41967239 caaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatgatgg 41967140  T
Q  111 gtccattg 118  Q
    ||||||||    
T  41967139 gtccattg 41967132  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 29422938 - 29423205
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaat--acattaacatagagtttaactacatatatcatatgatggg 111  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |  || ||   | |||||||||||| |||||||||||||| ||    
T  29422938 caaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgaccttttaacagagtttaactagatatatcatatgatcgg 29423037  T
Q  112 tccattgaattgatgttaacttatacataatcaataagaagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaa 211  Q
    ||||||||||||              |||||||||||||||||||||||||||||      ||| | |||||||||| ||               || ||    
T  29423038 tccattgaattg--------------ataatcaataagaagtaccttctcttgct------tgtgcgattctccttccta---------------gggaa 29423102  T
Q  212 ggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaacc 311  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||||| | |||||| | ||||||||||| |    
T  29423103 ggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaac 29423202  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 29443828 - 29443693
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattca-aataca----------ttaacatagagtttaactacatatatca 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||          ||||||| ||||||||||| ||||||||    
T  29443828 caaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatatatca 29443729  T
Q  103 tatgatgggtccattgaattgatgttaacttataca 138  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29443728 tatgatgggtccattgaattgatattaacttataca 29443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 29453799 - 29453676
Alignment:
Q  17 aggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa-atac-attaacatagagtttaactacatatatcatatgatgggtcc 114  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||  |||||||| ||||||||| ||||||||||||||||| ||     
T  29453799 aggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttacttttaacataaagtttaactgcatatatcatatgatggatct 29453700  T
Q  115 attgaattgatgttaacttataca 138  Q
    |||||| |||  ||||||||||||    
T  29453699 attgaactgaaattaacttataca 29453676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 29453610 - 29453506
Alignment:
Q  210 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaa 309  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||| | |||||| | |||||||||||    
T  29453610 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaa 29453511  T
Q  310 ccagc 314  Q
     ||||    
T  29453510 acagc 29453506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 29468086 - 29467987
Alignment:
Q  210 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaa 309  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||| | || || | |||||| | |||||||||||    
T  29468086 aaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaa 29467987  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 29443624 - 29443557
Alignment:
Q  213 gaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataact 280  Q
    |||||| |||||||||||||||||||||| ||||| | ||| |   ||||||||||||||||||||||    
T  29443624 gaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataact 29443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 29468273 - 29468238
Alignment:
Q  34 taattagagaatccttgtcctataataagaattcaa 69  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaa 29468238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 342
Target Start/End: Original strand, 4229 - 4418
Alignment:
Q  150 aagtaccttctcttgctcttccttgtaccattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggctt 249  Q
    ||||||||| |||||||||| | ||||  |||||||||| ||  |  || |||| |||| ||||||||||||||||||||||||||||||||| | |||     
T  4229 aagtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagctc 4328  T
Q  250 catcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaaaacct 342  Q
    ||| ||||| ||||||| |||   ||||||| ||||| | | |||||||||||||||||| |||| | |||||||  || |||||||||||||    
T  4329 cattgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcataccaaaacagcttcttatgatgcacctccaacaaaacct 4418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 4070 - 4197
Alignment:
Q  14 caaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaaataca---ttaacatagagtttaactacatatatcatatgatgg 110  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |  |   ||| || |||||||||||| ||| ||||||||||||    
T  4070 caaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttgagttttagcacagagtttaactaaataaatcatatgatgg 4169  T
Q  111 gtccattgaattgatgttaacttataca 138  Q
    ||||||||||  ||| ||||||||||||    
T  4170 gtccattgaacagatattaacttataca 4197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 45230240 - 45230348
Alignment:
Q  206 aggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcatac 305  Q
    ||||||||| |||| |||||| ||| || ||||||||||  |||||| |||| |||||||||||| ||||| | | ||||| | |||||| |||||||||    
T  45230240 aggtaaggatggtgatacaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatcatac 45230339  T
Q  306 caaaccagc 314  Q
    |||| ||||    
T  45230340 caaaacagc 45230348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 45243501 - 45243574
Alignment:
Q  206 aggtaaggaaggtggtac-aagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataa 278  Q
    |||||||||||||| ||| ||| ||| || ||||||||||  |||||| |||| |||||||||||| |||||||    
T  45243501 aggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataa 45243574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 45237762 - 45237830
Alignment:
Q  210 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataa 278  Q
    ||||||||||||||||| ||| || ||||||||||  ||||||  ||| |||||||||||  |||||||    
T  45237762 aaggaaggtggtacaaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataa 45237830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 26574525 - 26574576
Alignment:
Q  18 ggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaa 69  Q
    |||| |||| |||||||||||||||||||||| |||||| ||||||||||||    
T  26574525 ggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaa 26574576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 26574700 - 26574793
Alignment:
Q  216 ggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactgacttgctgactcttcaaatcataccaaa 309  Q
    ||||||||||||||||||||||||||||| || ||||| |||| | ||  | ||| || || ||| ||||| | ||||| ||||||||||||||    
T  26574700 ggtggtacaagacttccaacacaaatcatagcgtcatccaaatcaagatcttcttgaaaatgactaacttgattactctccaaatcataccaaa 26574793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 561004 - 561078
Alignment:
Q  195 ttatcatcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattcct 269  Q
    |||||||||  ||| ||||||||||||| ||| ||||||||| |||||||  ||| || || |||||||||||||    
T  561004 ttatcatcaataggcaaggaaggtggtagaaggcttccaacataaatcataactttattgatattaggaattcct 561078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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