View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10292_low_1 (Length: 634)
Name: NF10292_low_1
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 16 - 620
Target Start/End: Original strand, 27986392 - 27986996
Alignment:
| Q |
16 |
ggagccataaacagtgttaaaagggcatgacaggaaaaacgccacagcaatagaggtaacatatgctataatctgcgtttggatcagacctgtcgacgaa |
115 |
Q |
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| T |
27986392 |
ggagccataaacagtgttaaaagggcatgacaggaaaaacgccacagcaatagaggtaacatatgctataatctgcgtttggatcagacctgtcgacgaa |
27986491 |
T |
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| Q |
116 |
gaaccgccagaatgttgttttggtaagtacatcatagttttgtttacaagaggaagcggtgctccatctttccttgctcccaacactttttggctgctca |
215 |
Q |
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| T |
27986492 |
gaaccgccagaatgttgttttggtaagtacatcatagttttgtttacaagaggaagcggtgctccatctttccttgctcccaacactttttggctgctca |
27986591 |
T |
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| Q |
216 |
aaaggccacagaagatacatgcacaaattaatgataaaattataataactgctcaaaagttatacacaaaattttcacctaataaaggcgtcaatgtccc |
315 |
Q |
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| T |
27986592 |
aaaggccacagaagatacatgcataaattaatgctaaaattataataactgctcaaaagttatacacaaaattttcacctaataaaggcgtcaatgtccc |
27986691 |
T |
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| Q |
316 |
caaaaattgtcttatgtgatgtgagtgggggatatttgccattacaagaaaaaacaccaaggaaaattcaaacaccacaaggaaaagcaagtttggaaac |
415 |
Q |
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| T |
27986692 |
caaaaattgtcttatgtgatgtgagtgggggatgtttgccattacaagaaaaaacaccaaggaaaatccaaacaccacaaggaaaagcaagtttggaaac |
27986791 |
T |
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| Q |
416 |
ttagtagaagaaagctcacatataggagacgttttaaggcatgcatattttttaagcatatttcatatatatggatacgtgcacggaaaatgaatagaga |
515 |
Q |
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| T |
27986792 |
ttagtagaagaaagctcacatataggagacgttttaaggcatgcatattttttaagcatatttcatatatatggatacgtgcacggaaaatgaatagaga |
27986891 |
T |
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| Q |
516 |
tttcaagtttatttcatattttcatagtctttgagagattagacaataaaattgaattcgagagagaggctactaacagcgatacaactcattccagaga |
615 |
Q |
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| T |
27986892 |
tttcaagtttatttcatattttcatagtctttgagagattagacaataaaattgaattcgagagagaggctactaacagcgatacaactcattccagaga |
27986991 |
T |
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| Q |
616 |
ctagt |
620 |
Q |
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| T |
27986992 |
ctagt |
27986996 |
T |
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