View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10292_low_10 (Length: 267)
Name: NF10292_low_10
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 6251883 - 6251997
Alignment:
| Q |
1 |
atgatagaaataggatttgtgaattgatgatgatatatcaaaaatacaaagatgaagtatgagaggctctcaacgattggattttaaagcgagtgagcag |
100 |
Q |
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| T |
6251883 |
atgatagaaatgggatttgtgaattgatgatgatatatcaaaaatacaaagatgaagtatgagaggctctcaacgattggattttaaagggagtgagcag |
6251982 |
T |
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| Q |
101 |
ccgtggacccacaaa |
115 |
Q |
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| T |
6251983 |
ccgtggacccacaaa |
6251997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 6186195 - 6186338
Alignment:
| Q |
116 |
agtttgatattcgtagaacttgcatatcacctc-----ctcgatcatctatcact---agtattttctacatgtaaatgttcaattatgtatctttatag |
207 |
Q |
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| T |
6186195 |
agtttgatattcgtagaacttgcatatcacctcacctcctcgatcatttatcactgctagtattttgaacacgtaattgttcaattatgtatcttcatag |
6186294 |
T |
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| Q |
208 |
atagttataattgttaattgttaattagattcatctatatatct |
251 |
Q |
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| T |
6186295 |
acagttaaaattgtaaattgttaattagattcatttatatatct |
6186338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 6192711 - 6192854
Alignment:
| Q |
116 |
agtttgatattcgtagaacttgcatatcacctc-----ctcgatcatctatcact---agtattttctacatgtaaatgttcaattatgtatctttatag |
207 |
Q |
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| T |
6192711 |
agtttgatattcgtagaacttgcatatcacctcacctcctcgatcatttatcactgctagtattttgaacacgtaattgttcaattatgtatcttcatag |
6192810 |
T |
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| Q |
208 |
atagttataattgttaattgttaattagattcatctatatatct |
251 |
Q |
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| T |
6192811 |
acagttaaaattgtaaattgttaattagattcatttatatatct |
6192854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 6251997 - 6252071
Alignment:
| Q |
153 |
atcatctatcactagtattttctacatgtaaatgttcaattatgtatctttatagatagttataattgttaattg |
227 |
Q |
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| T |
6251997 |
atcatctatccctagtattttctacatgtaaatggtcaattatgtatgtttatggataattaaaattgttaattg |
6252071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 6111730 - 6111819
Alignment:
| Q |
15 |
atttgtgaattgatga-tgatatatcaaaaatacaaagatgaagtatgagaggctctcaacgattggattttaaagcgagtgagcagccgt |
104 |
Q |
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| T |
6111730 |
atttgtgaagtgatgaatgatatatcagaaacacaaagatgtagcatt-gaggctctcaacaattggattttaaagggagtgagcagccgt |
6111819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 6186126 - 6186173
Alignment:
| Q |
63 |
gaggctctcaacgattggattttaaagcgagtgagcagccgtggaccc |
110 |
Q |
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| T |
6186126 |
gaggctctcaacaattggattttatagggaatgagcagccgtggaccc |
6186173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 6192642 - 6192689
Alignment:
| Q |
63 |
gaggctctcaacgattggattttaaagcgagtgagcagccgtggaccc |
110 |
Q |
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| T |
6192642 |
gaggctctcaacaattggattttatagggaatgagcagccgtggaccc |
6192689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 6202629 - 6202715
Alignment:
| Q |
116 |
agtttgatattcgtagaacttgcatatcac-----ctcctcgatcatctatca---ctagtattttctacatgtaaatgttcaatta |
194 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||| ||||| |||| |
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| T |
6202629 |
agtttaatattcgtagaacttgcatatcacctcacctcctcgatcatttatcactgctagtattttgtacacgtaattgttctatta |
6202715 |
T |
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