View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10292_low_13 (Length: 254)

Name: NF10292_low_13
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10292_low_13
NF10292_low_13
[»] chr7 (12 HSPs)
chr7 (1-238)||(17824904-17825141)
chr7 (64-176)||(15676006-15676118)
chr7 (56-180)||(17849636-17849759)
chr7 (89-176)||(15664176-15664263)
chr7 (56-168)||(16103961-16104074)
chr7 (56-168)||(14607032-14607145)
chr7 (56-168)||(16026206-16026319)
chr7 (89-176)||(16173755-16173842)
chr7 (95-153)||(31160127-31160185)
chr7 (95-153)||(31184854-31184912)
chr7 (95-153)||(31242230-31242288)
chr7 (95-152)||(31059309-31059366)
[»] chr1 (10 HSPs)
chr1 (89-176)||(15041745-15041831)
chr1 (89-176)||(14531585-14531672)
chr1 (89-176)||(15033604-15033691)
chr1 (89-176)||(15038183-15038270)
chr1 (89-176)||(14521485-14521572)
chr1 (89-176)||(15003285-15003372)
chr1 (89-176)||(14468906-14468993)
chr1 (89-176)||(15012173-15012260)
chr1 (89-176)||(14505158-14505245)
chr1 (110-176)||(14483924-14483990)
[»] scaffold0289 (1 HSPs)
scaffold0289 (64-176)||(13331-13442)
[»] scaffold0400 (2 HSPs)
scaffold0400 (89-176)||(13954-14041)
scaffold0400 (89-176)||(7581-7668)
[»] scaffold0365 (2 HSPs)
scaffold0365 (89-176)||(14597-14684)
scaffold0365 (89-176)||(8225-8312)
[»] chr8 (2 HSPs)
chr8 (89-176)||(17028978-17029065)
chr8 (89-176)||(17559414-17559501)
[»] chr3 (1 HSPs)
chr3 (81-135)||(16737026-16737080)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 17825141 - 17824904
Alignment:
Q  1 tactacttcaaattatctatgcgtcatgattcctcttttgtctaatcaattttgaacatgattcctcttttgattttgtacagaatacgcatacacaatg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17825141 tactacttcaaattatctatgcgtcgtgattcctcttttgtctaatcaattttgaacatgattcctcttttgattttgtacagaatatgcatacacaatg 17825042  T
Q  101 caagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggaggtttgatatatcattcctcactat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  17825041 caagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaaaactttttggaaaacaccctggaggtttgatatatcattcctcactat 17824942  T
Q  201 caagtttgtggaaaattgtgggcaacttacttgatgat 238  Q
    ||  ||||||||||||||||||||||||||||||||||    
T  17824941 cacctttgtggaaaattgtgggcaacttacttgatgat 17824904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 15676118 - 15676006
Alignment:
Q  64 cctcttttgattttgtacagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttgga 163  Q
    ||||||||||||| |||||||||  |||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||  | ||||    
T  15676118 cctcttttgatttggtacagaatttgcatacacaatggaagtgaatgtgaagtgtgatgtgtatagttttgggatattagcattggaaatactatatgga 15676019  T
Q  164 aaacaccctggag 176  Q
    |||||||| ||||    
T  15676018 aaacacccgggag 15676006  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 17849636 - 17849759
Alignment:
Q  56 acatgattcctcttttgattttgtacagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatac 155  Q
    ||||||||| ||||||||||| | |||||||| || ||||||||| ||||||||||||| |||||||| |||||||| || || || |||||||||||||    
T  17849636 acatgattc-tcttttgatttggcacagaatatgcttacacaatgaaagtgaatgagaagtgtgatgtatatagtttcggagtgttggcattggaaatac 17849734  T
Q  156 attttggaaaacaccctggaggttt 180  Q
      ||||||| |||||| ||||||||    
T  17849735 tctttggaagacacccaggaggttt 17849759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 15664263 - 15664176
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||  | |||||||||||| ||||    
T  15664263 gcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggggtattggcattggaaataccatatggaaaacacccaggag 15664176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 16103961 - 16104074
Alignment:
Q  56 acatgattcctcttttgatttt-gtacagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaata 154  Q
    ||||||||||| ||||  |||| ||||||||   ||||||||||   ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |    
T  16103961 acatgattcctatttttgttttcgtacagaacttgcatacacaacaaaagtgaatgagaagtgtgatgtgtatagtttcggggtattagcattggaaaca 16104060  T
Q  155 cattttggaaaaca 168  Q
    | ||||||||||||    
T  16104061 ctttttggaaaaca 16104074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 14607032 - 14607145
Alignment:
Q  56 acatgattcctcttt-tgattttgtacagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaata 154  Q
    ||||||||||| ||| || ||| ||||||||   ||||||||||   ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  14607032 acatgattcctatttctgttttcgtacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaata 14607131  T
Q  155 cattttggaaaaca 168  Q
    | ||||||||||||    
T  14607132 ctttttggaaaaca 14607145  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 16026206 - 16026319
Alignment:
Q  56 acatgattcctcttt-tgattttgtacagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaata 154  Q
    ||||||||||| ||| || ||| ||||||||   ||||||||||   ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  16026206 acatgattcctatttctgttttcgtacagaacttgcatacacaacaaaagtgaacgagaagtgtgatgtgtacagttttggagtattagcattggaaata 16026305  T
Q  155 cattttggaaaaca 168  Q
    | ||||||||||||    
T  16026306 ctttttggaaaaca 16026319  T

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Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 16173755 - 16173842
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||| | |||| |  ||||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||||||    
T  16173755 gcatacacaacgaaagtaaccgagaagtgtgatgtgtatagttttggagtattagcattggaaatactgtttggaaaacatcctggag 16173842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 31160127 - 31160185
Alignment:
Q  95 acaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaat 153  Q
    |||||| | |||||||||||||||||||| ||||||||||| ||| | || ||||||||    
T  31160127 acaatggaggtgaatgagaaatgtgatgtatatagttttggagtacttgctttggaaat 31160185  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 31184854 - 31184912
Alignment:
Q  95 acaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaat 153  Q
    |||||| |||||||||||||||||||||| || |||||||| ||| | || ||||||||    
T  31184854 acaatgaaagtgaatgagaaatgtgatgtctacagttttggagtacttgctttggaaat 31184912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 31242230 - 31242288
Alignment:
Q  95 acaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaat 153  Q
    |||||| | |||||||||||||||||||| ||||||||||| ||| | || ||||||||    
T  31242230 acaatggaggtgaatgagaaatgtgatgtatatagttttggagtacttgctttggaaat 31242288  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 31059309 - 31059366
Alignment:
Q  95 acaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaa 152  Q
    |||||| |||||||||||||||||||||| || |||||||| ||| | || |||||||    
T  31059309 acaatggaagtgaatgagaaatgtgatgtatacagttttggagtacttgctttggaaa 31059366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 15041745 - 15041831
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  15041745 gcatacacaatggaagt-aatgagaaatgtgatgtgtatagttttggggtattaaccttggaaatacattttggaaagcaccctggag 15041831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 14531672 - 14531585
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||||  | |||||||||| ||||||||||||||||||||    
T  14531672 gcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattgaccttggaaatactttttggaaaacaccctggag 14531585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 15033604 - 15033691
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||| | |||||||||| ||||||||| ||||||||||    
T  15033604 gcatacacaatggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatactttttggaaagcaccctggag 15033691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 15038183 - 15038270
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||||| ||||| | |||||||||| ||||||||| ||||||||||    
T  15038183 gcatacacaatggaagtaaatgagaaatgtgatgtgtatggttttgggatattaaccttggaaatactttttggaaagcaccctggag 15038270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 14521572 - 14521485
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| | ||| | |||||||||| ||| ||||| ||||||||||    
T  14521572 gcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggattttaaccttggaaatacttttcggaaagcaccctggag 14521485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 15003285 - 15003372
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||| ||||| | |||||||| | ||||||||| ||||||||||    
T  15003285 gcatacacaatggaagtaaatgagaaatgtgatgtgtttagttttgggatattaaccttggaaatgctttttggaaagcaccctggag 15003372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 14468906 - 14468993
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||| |||||| | |||||||| | | |||||||||| |||||||    
T  14468906 gcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaaccttggaaatgcttcttggaaaacatcctggag 14468993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 15012173 - 15012260
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| ||| ||||||| ||||| |||||||||||| ||||| | |||||||||| ||||||||| ||||||||||    
T  15012173 gcatacacaatggaagtaaataagaaatgcgatgtatatagttttgggatattaaccttggaaatactttttggaaagcaccctggag 15012260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 14505158 - 14505245
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    ||||| |||||| |||| |||||||| |||||||||||||||||||| ||||||    ||||||||| | |||||||||| |||||||    
T  14505158 gcatatacaatggaagtaaatgagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggag 14505245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 14483924 - 14483990
Alignment:
Q  110 gagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    ||||| |||||||||||||||||||| ||||||    ||||||||| | |||||||||| |||||||    
T  14483924 gagaagtgtgatgtgtatagttttggagtattaagcctggaaatacttcttggaaaacatcctggag 14483990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 13442 - 13331
Alignment:
Q  64 cctcttttgattttgtacagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttgga 163  Q
    ||||| ||||||| ||| |||||  |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||  | ||||    
T  13442 cctctgttgatttggtatagaatttgcatacactatggaagtgaatgagaagtgtgatgtgtatagttttggggtattagca-tggaaatactatatgga 13344  T
Q  164 aaacaccctggag 176  Q
    ||| |||||||||    
T  13343 aaaaaccctggag 13331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 13954 - 14041
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||||| | |||||||||| || |||||| ||||||||||    
T  13954 gcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggag 14041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 7581 - 7668
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| ||||| | |||||||||| ||||||||| || |||||||    
T  7581 gcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatactttttggaaagcatcctggag 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 14597 - 14684
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||||| | |||||||||| || |||||| ||||||||||    
T  14597 gcatacacaatggaagtaaatgagaaatgtgatgtgtatagttttgggatattaaccttggaaatactttatggaaagcaccctggag 14684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 8225 - 8312
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| ||||| | |||||||||| ||||||||| || |||||||    
T  8225 gcatacacaatggaagtaaatgagaagtgtgatgtgtatagttttgggatattaaccttggaaatactttttggaaagcatcctggag 8312  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 17028978 - 17029065
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| ||||||| |||||||||||||||||| ||||||||| | |||||||||| ||||||||| || |||||||    
T  17028978 gcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatactttttggaaagcatcctggag 17029065  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 17559414 - 17559501
Alignment:
Q  89 gcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttggggtattagcattggaaatacattttggaaaacaccctggag 176  Q
    |||||||||||| |||| ||||||| |||||||||||||||||| ||||||||| | |||||||||| ||||||||| || |||||||    
T  17559414 gcatacacaatggaagtaaatgagagatgtgatgtgtatagtttcggggtattaaccttggaaatactttttggaaagcatcctggag 17559501  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 16737026 - 16737080
Alignment:
Q  81 cagaatacgcatacacaatgcaagtgaatgagaaatgtgatgtgtatagttttgg 135  Q
    ||||||| ||||||||| || ||||  |||||||| |||||||||||||||||||    
T  16737026 cagaatatgcatacacattgaaagttgatgagaaaagtgatgtgtatagttttgg 16737080  T

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