View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10292_low_14 (Length: 238)
Name: NF10292_low_14
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 19290944 - 19290735
Alignment:
| Q |
10 |
ttttttaaaaagttgtcccactcgtgtaaattctcaatnnnnnnnn---tcaatggagtgaatcataagaactttaagacaattttcagatgaagtttga |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19290944 |
tttttttaaaagttgtcccactcgtgtaaattctcaataaaaaaaaaaatcaatggagtgaatcataagaactttaagacaattttcagatgaagtttga |
19290845 |
T |
|
| Q |
107 |
atcgattcaaacttccaaatgcaagaatttgaattgtatcataaaaactcagatgaaaaattgatacgaatcaaagaacattgatacatatcaactaggc |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |
|
|
| T |
19290844 |
atcgattcaaacttctaaatgcaagaatttgaattgtatcataaaaactcagatgaaaaattgatacgaatcaaagaatattgataaatatcaactaagc |
19290745 |
T |
|
| Q |
207 |
caaaaccttg |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
19290744 |
caaaaccttg |
19290735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 29389372 - 29389495
Alignment:
| Q |
86 |
caattttcagatgaagtttgaatcgattcaaacttccaaatgcaagaatttgaattgtatcataaaaactcagatgaaaaattgatacgaatcaaagaac |
185 |
Q |
| |
|
|||||| || |||||||||||||||||||||| | |||| || | || |||||||||||||| ||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
29389372 |
caatttccaaatgaagtttgaatcgattcaaatatgcaaaggccaaaaattgaattgtatcatgaaa-ctcagatgaagt-ttgatacgattcaaagaac |
29389469 |
T |
|
| Q |
186 |
attgatacatatcaactaggccaaaa |
211 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
29389470 |
ggtgatacatatcaactacgccaaaa |
29389495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 29798694 - 29798587
Alignment:
| Q |
83 |
agacaattttcagatgaagtttgaatcgattcaaacttccaaatgcaagaatttgaattgtatcataaaaactcagatgaaaaattgatacgaatcaaag |
182 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||||||| | |||| ||||||| ||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
29798694 |
agacaatttttagatgaacattgaatcaattcaaacttccaaaggtaagagtttgaatcgtatcataagttcttagatg-aatattgatacgaatcaaag |
29798596 |
T |
|
| Q |
183 |
aacattgat |
191 |
Q |
| |
|
|| |||||| |
|
|
| T |
29798595 |
aatattgat |
29798587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 14754089 - 14754150
Alignment:
| Q |
87 |
aattttcagatgaagtttgaatcgattcaaacttccaaatgcaagaatttgaattgtatcat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||| ||||||| ||||||| |
|
|
| T |
14754089 |
aattttcagatgaagtttgaatcgattcaaacttgcaaaggctagattttgaatcgtatcat |
14754150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 49336994 - 49337130
Alignment:
| Q |
84 |
gacaattttcagatgaagtttgaatcgattcaaacttccaaatgcaagaatttgaattgtatcataaaaactcagatgaaaaattgatacgaatcaaaga |
183 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||| |||| | |||| | || |||| |||| || ||| |||||||| |||||||| | |
|
|
| T |
49336994 |
gacaatttccatatgaagtttaaatcgattcaaacttccaaaggcaatagtttggaccgtgtcat-gaaacccatatg-aaaattgaaacgaatca---a |
49337088 |
T |
|
| Q |
184 |
acattgatacatatcaactaggccaaaaccttggacaaagtg |
225 |
Q |
| |
|
|||||| |||||||||| | ||||||| |||||||| |||| |
|
|
| T |
49337089 |
acattgttacatatcaatcaagccaaaatcttggacagagtg |
49337130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University