View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10292_low_2 (Length: 489)
Name: NF10292_low_2
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 232 - 471
Target Start/End: Complemental strand, 27994681 - 27994439
Alignment:
| Q |
232 |
cagacaggctatatattgttgtatatttttacgataagtattcactactttggtatttgaaatctacatagcctaagca-gaaaaaacactaaacaacat |
330 |
Q |
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| T |
27994681 |
cagacagactatatattgttgtatatttttacgataagtattcactactttggtatttgaaatctacatagcctaagcatgaaaaaacactaaacaacat |
27994582 |
T |
|
| Q |
331 |
ctgattcctaatcccatcagtagaaatgaatgaagaaaccatttcaaca--tatattgtatgttcaattctcatcgtctcatctcatattataatctggg |
428 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |||||| || |
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| T |
27994581 |
ctgattcctagtcccatcagtagaaacgaatgaagaaaccatttcagcaacaatattgtatgttcaattctcatcgtctcttctcatatcataatccagg |
27994482 |
T |
|
| Q |
429 |
tctgaaaaggtaatataagcataattttattctgtaataattc |
471 |
Q |
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| T |
27994481 |
tctgagaaggtaatataagcataattttattctgtaataattc |
27994439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 232 - 459
Target Start/End: Complemental strand, 28004420 - 28004185
Alignment:
| Q |
232 |
cagacaggctatatattgttgtatatttttacgataagtattcactactttggtatttgaaatctacatagcctaagcagaaaaaacactaaacaacatc |
331 |
Q |
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|||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||| |
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| T |
28004420 |
cagacaggctgtatatagttgtatatttttacaataagtattcactaccttggtatttgaaatatacattgtccgagcagaaaaaacactaaacaacatc |
28004321 |
T |
|
| Q |
332 |
tgattcct-------aatcccatcagtagaaatgaatgaagaaaccattt---caacatatattgtatgttcaattctcatcgtctcatctcatattata |
421 |
Q |
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| T |
28004320 |
tgattcctgattcctaatcccatcagtagaaacgaataaagaaaccattttagcaacat-taatgtacgttcaattctcatcgtctcatctcatatcata |
28004222 |
T |
|
| Q |
422 |
atctgggtctgaaaaggtaatataagcataattttatt |
459 |
Q |
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| T |
28004221 |
atctcggtctgagaaggtaa-ataagcataattttatt |
28004185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 27994895 - 27994803
Alignment:
| Q |
15 |
cagagacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgataggtgtaat |
108 |
Q |
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| T |
27994895 |
cagagacgaacgaagaa-ccattagtaacagtaaatttatcaaattatggtctgaaagaagaaaattataatgaatttaattgataggtgtaat |
27994803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 28004641 - 28004562
Alignment:
| Q |
20 |
acgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgat |
99 |
Q |
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| T |
28004641 |
acgaacgaagaaaccattagtaacagtaaatttatcaaattatggactgaaataagaaaattataataaatttaattgat |
28004562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 27995532 - 27995443
Alignment:
| Q |
15 |
cagagacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgataggtg |
104 |
Q |
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| T |
27995532 |
cagagacgaacgaagaaaccattagtaaaaataaaattatcaaattatagacggaaagaagaaaattataatgaatttaattaataggtg |
27995443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 28004977 - 28004896
Alignment:
| Q |
18 |
agacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgat |
99 |
Q |
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| T |
28004977 |
agacgaatgaagaaaccattagtaatagtaaacttattaaattatggactgaaagaagaaaattataatgaatttaattgat |
28004896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 27995196 - 27995112
Alignment:
| Q |
15 |
cagagacgaacgaagaaaccattagtaacagtaaatttatcaaattatggtttgaaagaagaaaattataatgaatttaattgata |
100 |
Q |
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|||||| ||||||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
27995196 |
cagagatgaacgaagaaatcattagtaacaataa-tttatcaaattatgaatttaaagaagaaaattataatgaatttaattgata |
27995112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 27995306 - 27995245
Alignment:
| Q |
233 |
agacaggctatatattgttgtatatttttacgataagtattcactactttggtatttgaaat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
27995306 |
agacaggctatatattgttgtatatttttacgataagtatttactttcttgatatttgaaat |
27995245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 28005078 - 28005040
Alignment:
| Q |
239 |
gctatatattgttgtatatttttacgataagtattcact |
277 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
28005078 |
gctatgtattgttgtatatttttacgataagtattcact |
28005040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 28005386 - 28005349
Alignment:
| Q |
239 |
gctatatattgttgtatatttttacgataagtattcac |
276 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
28005386 |
gctatatattgttgtatatttttatgataagtattcac |
28005349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 28004753 - 28004711
Alignment:
| Q |
236 |
caggctatatattgttgtatatttttacgataagtattcacta |
278 |
Q |
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|||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
28004753 |
caggctgtatatagttgtatacttttacgataagtattcacta |
28004711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 28005251 - 28005219
Alignment:
| Q |
68 |
gaaagaagaaaattataatgaatttaattgata |
100 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
28005251 |
gaaagaagaaaattataatgaatttaactgata |
28005219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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