View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10292_low_5 (Length: 363)
Name: NF10292_low_5
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 164 - 346
Target Start/End: Original strand, 7907928 - 7908110
Alignment:
| Q |
164 |
actactcatatttcgatcatgtaggagttgttgaatccaagatccaaatcgtggaactctaacattattcatatagtctaccactaatctaattctaaaa |
263 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7907928 |
actactcatatttagatcatgtaggagttgttgaatccaggatccaaatcgtggaactctaacattattcatatagtctaccactaatctaattctacaa |
7908027 |
T |
|
| Q |
264 |
ttatcctaaaggtgcctctgcttgattcagttattattcaagtaaatcaaattacgtagttaatatagtcatcgagcaaattt |
346 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7908028 |
ttatcctaaaggtgcagctgtttgattcagttactattcaagcaaatcaaattacgtagttaatatagtcatcgagcaaattt |
7908110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 7907763 - 7907877
Alignment:
| Q |
45 |
gcaaatctacttcttttcttcccaatttcatcatgtttcaggaaccactctttgttccttgtcatgtgattggactttggagcatcctatatgtctaggt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7907763 |
gcaaatctacttcttttcttcccaatttcatcatgtttcaggaaccactctttgttccttgtcatgtga-------ttggagcatcctatatgtctaggt |
7907855 |
T |
|
| Q |
145 |
actaaaaattggatttgtcact |
166 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7907856 |
actaaaaattggatttgtcact |
7907877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7907699 - 7907746
Alignment:
| Q |
1 |
catggccatattttcttttcactcagacttaacaactactcgaggcaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7907699 |
catggccatattttcttttcactcagacttaacaactactcgaggcaa |
7907746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University