View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10292_low_6 (Length: 309)
Name: NF10292_low_6
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 195493 - 195194
Alignment:
| Q |
1 |
aaaatatagcaa-gctcaatacaatacaagctgtcaagaaagctttggtcataacttgaacgtccctagcaaaatcagccgttaactagtttgatcgaag |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
195493 |
aaaatatagcaaagctcaatacaatacaagttgtcaagaaagctttggtcataacttgaacgtccctagcaaaatcagccgttaactagtttgatcgaag |
195394 |
T |
|
| Q |
100 |
tcaatcgcatgcttttgctcctcatttcgatgcttctcttccttatttcatcgacaaatgattcaatattgcggtgtgaagaaccaccatctctaatagc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
195393 |
tcaatcgcatgcttttgctcctcatttcgatgcttctcttccttatttcatcgacaaatgattcaatattgcggtgtgaagaaccaccatctctaatagc |
195294 |
T |
|
| Q |
200 |
agcttccgctgccgccttcaagctgagcacattttgctttatctcctttgccttggttccaacagttgcctccaacaaacacttgttgacctcatctctg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
195293 |
agcttccgctgccgccttcaagctgagcacattttgctttatctcctttgccttggttccaacagttgcctccaacaaacacttgttaacctcatctctg |
195194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University