View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10292_low_7 (Length: 275)
Name: NF10292_low_7
Description: NF10292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10292_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 3590449 - 3590694
Alignment:
| Q |
18 |
actcctaaggaggttttccagtttcatagtgaccaaggattgggatgtttatggtggctggtatatcaaaatatatgtctgcctaactctatatacggga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590449 |
actcctaaggaggttttccagtttcatagtgaccaaggattgggatgtttatggtggctggtatatcaaaatatatgtctgcctaactctatatacggga |
3590548 |
T |
|
| Q |
118 |
tccgttgatctagacttagacttccaaaactgcttcatcaccttcttcctttccccagatgttttgaatctcattaattcagagaatgataccaatagca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590549 |
tccgttgatctagacttagacttccaaaactgcttcatcaccttcttcctttccccagatgttttgaatctcattaattcagagaatgataccaatagca |
3590648 |
T |
|
| Q |
218 |
agttcaggattggg-aatggtctgtgtcaatggcgcctatctctgc |
262 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3590649 |
agttcaggattgggaaatggtctgtgtcaatggcgcctatctctgc |
3590694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University