View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10293_low_1 (Length: 875)
Name: NF10293_low_1
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10293_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 633; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 13 - 856
Target Start/End: Complemental strand, 5607986 - 5607145
Alignment:
| Q |
13 |
cacagacacagacaccaaccctacgctctgagactagtaatgaattnnnnnnnnnnnngaatgaaggtaatcacatgtgacggtgcccagtgtcggacac |
112 |
Q |
| |
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|||| ||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||| |
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| T |
5607986 |
cacatacacagacaccaaccctacgctccaacactagtaatgaattaaaaaataaaaagaatgaaagtaatcacatgcgacggtgcccggtgtcggacac |
5607887 |
T |
|
| Q |
113 |
caacacattttagacatcagacacattcaatctgaagtgtcagtgctacgcagcttgtatcaatctaattttgaagagtaggataatcatgtgatggagc |
212 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607886 |
cgacacattttagacaccagacacattcaatctgaagtgtcagtgctacgcagcttgtatcaatctaattttgaagagtaggataatcatgtgatggagc |
5607787 |
T |
|
| Q |
213 |
agctggttgagaatgatttaggacatcatacagaacaagcaagttgaaaactccaggttttgtcagccaagcagtcagcacttctccaggagacaccaat |
312 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5607786 |
agctggttgagaatgatttaggacatcagacagaacaagcaagttgaaaactccaggttttgtcaaccaagcagtcagcacttctccaggagacaccaat |
5607687 |
T |
|
| Q |
313 |
cttcccaaattattctcataaattctaaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctccaagcactttactgt |
412 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607686 |
cttcccaaattattctcataaattctgaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctccaagcactttactgt |
5607587 |
T |
|
| Q |
413 |
gctttccccagccagttaaaatgctac------nnnnnnnnnnntgaaattgtgatcaacaatttaatcatcttatcttattaatccaattaaatgaaaa |
506 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5607586 |
gctttccccagccagttaaaatgctacaaaaaaaaataaaaaaatgaaattgtgatcaacaatttaatc-----atcttattaatccaattaaatgaaaa |
5607492 |
T |
|
| Q |
507 |
caataaaaaattcataggtagtaaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatga |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607491 |
caataaaaaattcataggtagtaaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatga |
5607392 |
T |
|
| Q |
607 |
accattgcacaagcagcaccacaagacatcagatgcagatccaagcaagaaattgaccattcgcctttccacacatttcggcgtctcccttcaattacaa |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607391 |
accattgcacaagcagcaccacaagacatcagatgcagatccaagcaagaaattgaccattcgcctttccacacatttcggcgtctcccttcaattacaa |
5607292 |
T |
|
| Q |
707 |
ccatttcagctccgcgtctctggtgtcgataacaaattttattatnnnnnnnnnnnngaaaatcagaatgttagataaacaaattagaaaattaacagaa |
806 |
Q |
| |
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||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607291 |
ccatttcagctccgcgtttctgatgtcaataacaaattttattat---aaaaaaacagaaaatcagaatgttagataaacaaattagaaaattaacagaa |
5607195 |
T |
|
| Q |
807 |
gcaaaactgacacatttctgatggctggactttttacctgaccaaagtgc |
856 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5607194 |
gcaaaactgatacatttctgatggctggactttttacctgaccaaagtgc |
5607145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 529 - 728
Target Start/End: Original strand, 5588495 - 5588694
Alignment:
| Q |
529 |
aaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatgaaccattgcacaagcagcaccac |
628 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| | ||||| ||| | || |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5588495 |
aaagatccatacgtcacaatcttaggcagttcagagccttcaaataaagtactatgcatattgagcaaccatgaatgaaccattgcacaagcagcaccac |
5588594 |
T |
|
| Q |
629 |
aagacatcagatgcagatccaagcaagaaattgaccattcgcctttccacacatttcggcgtctcccttcaattacaaccatttcagctccgcgtctctg |
728 |
Q |
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| T |
5588595 |
aagacatcagatgcagatccagacaagaaattgaccattcacctttccacacatttcggcgtctcccttcggttacaaccatttcagctccgcgtctctg |
5588694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 529 - 728
Target Start/End: Original strand, 5593456 - 5593655
Alignment:
| Q |
529 |
aaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatgaaccattgcacaagcagcaccac |
628 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| | ||||| ||| | || |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
5593456 |
aaagatccatacgtcacaatcttaggcagttcagagccttcaaataaagtactatgcatattgagcaaccatgaatgaaccattgcacaagcagcaccac |
5593555 |
T |
|
| Q |
629 |
aagacatcagatgcagatccaagcaagaaattgaccattcgcctttccacacatttcggcgtctcccttcaattacaaccatttcagctccgcgtctctg |
728 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5593556 |
aagacatcagatgcagatccagacaagaaattgaccattcacctttccacacatttcggcgtctcccttcggttacaaccatttcagctccgcgtctctg |
5593655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 200 - 437
Target Start/End: Original strand, 5588173 - 5588410
Alignment:
| Q |
200 |
catgtgatggagcagctggttgagaatgatttaggacatcatacagaacaagcaagttgaaaactccaggttttgtcagccaagcagtcagcacttctcc |
299 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| | |||| | ||||||||| || || || | ||| |
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| T |
5588173 |
catgtgatggagcagcagcttgagaatgatttaggacatcatacagaacaagcagattgaaaatgctgggttgtctcagccaagtagccaacaaatttcc |
5588272 |
T |
|
| Q |
300 |
aggagacaccaatcttcccaaattattctcataaattctaaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctcca |
399 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| |||||||| || ||||| ||||| |||||||| || |||||| |||| |||||||| || || |
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| T |
5588273 |
aggagaataataccttcccaaattaccctcagcaatcctaaagggtgaccccattccattaaggagtgcctcgacagcccttttcaaagttccgtcaccc |
5588372 |
T |
|
| Q |
400 |
agcactttactgtgctttccccagccagttaaaatgct |
437 |
Q |
| |
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| |||||| |||||||||||||| |||||||| ||||| |
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| T |
5588373 |
atcactttgctgtgctttccccaaccagttaagatgct |
5588410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 200 - 437
Target Start/End: Original strand, 5593134 - 5593371
Alignment:
| Q |
200 |
catgtgatggagcagctggttgagaatgatttaggacatcatacagaacaagcaagttgaaaactccaggttttgtcagccaagcagtcagcacttctcc |
299 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| | |||| | ||||||||| || || || | ||| |
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| T |
5593134 |
catgtgatggagcagcagcttgagaatgatttaggacatcatacagaacaagcagattgaaaatgctgggttgtctcagccaagtagccaacaaatttcc |
5593233 |
T |
|
| Q |
300 |
aggagacaccaatcttcccaaattattctcataaattctaaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctcca |
399 |
Q |
| |
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|||||| | |||||||||||| |||| ||| |||||||| || ||||| ||||| |||||||| || |||||| |||| |||||||| || || |
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| T |
5593234 |
aggagaataataccttcccaaattaccctcagcaatcctaaagggtgaccccattccattaaggagtgcctcgacagcccttttcaaagttccgtcaccc |
5593333 |
T |
|
| Q |
400 |
agcactttactgtgctttccccagccagttaaaatgct |
437 |
Q |
| |
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| |||||| |||||||||||||| |||||||| ||||| |
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|
| T |
5593334 |
atcactttgctgtgctttccccaaccagttaagatgct |
5593371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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