View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10293_low_10 (Length: 223)
Name: NF10293_low_10
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10293_low_10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 49271758 - 49271554
Alignment:
| Q |
8 |
gagcagagagtcgttcagtagttgataagactctcgacaaatagaattgaccaacaggacataaattttactttcatttctgaaatatatattttttaac |
107 |
Q |
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| T |
49271758 |
gagccgagagtcgttcagtagttgataagactctcgacaaatagagttgaccaacaggacataaattt-----------ctgaaatatatattttttaac |
49271670 |
T |
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| Q |
108 |
tagacataataagggaaaagaagacttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaactttaccca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49271669 |
tagacataataagggaaaagaagacttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttaccca |
49271570 |
T |
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| Q |
208 |
aatgaccaaccatcat |
223 |
Q |
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|||||||||||||||| |
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| T |
49271569 |
aatgaccaaccatcat |
49271554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 49254984 - 49254886
Alignment:
| Q |
125 |
aagaagacttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaactttacccaaatgaccaaccatcat |
223 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
49254984 |
aagaagacttacaagaagactgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcat |
49254886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 49267240 - 49267151
Alignment:
| Q |
131 |
acttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaactttacccaaatgaccaaccat |
220 |
Q |
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| T |
49267240 |
acttacaagaagactgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccat |
49267151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 49274607 - 49274690
Alignment:
| Q |
144 |
ctgaagccagagacaccatagagagagatagca----atagctgtggtagaaagagcaactttacccaaatgaccaaccatcat |
223 |
Q |
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||||||||||||||| || | |||||||||||| ||||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
49274607 |
ctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcat |
49274690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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