View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10293_low_11 (Length: 218)
Name: NF10293_low_11
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10293_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 52807800 - 52807599
Alignment:
| Q |
17 |
acgtaggaggtatgaagtagaggatgttgcagggtgtgaaaagttgaaaggggttgtgcctcaacaaaatggacattggggtgcacaaatatatgcaaat |
116 |
Q |
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| T |
52807800 |
acgtaggaggtatgaagtagaggatgttgcagggtgtgaaaagttgaaaggggttgtgcctcaacaaaatggacattggggtgcacaaatatatgcaaat |
52807701 |
T |
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| Q |
117 |
caccaaagaatatggttagggacattcaaatctgaaagagatgctgccatggcttacgacagcgccaccattaagctcagaagcagagaaagccatagaa |
216 |
Q |
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| T |
52807700 |
caccaaagaatatggttagggacattcaaatctgaaagagatgctgccatggcttacgacagcgccaccattaagctcagaagcagagaaagccatagaa |
52807601 |
T |
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| Q |
217 |
ac |
218 |
Q |
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| T |
52807600 |
ac |
52807599 |
T |
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