View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10293_low_2 (Length: 557)
Name: NF10293_low_2
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10293_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 252 - 543
Target Start/End: Original strand, 33399827 - 33400120
Alignment:
| Q |
252 |
aggacagctgattccttccttttgaggtgctataaattgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaga |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33399827 |
aggacagctgattccttccttttgaggtgctataacttgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaat |
33399926 |
T |
|
| Q |
352 |
gtggcttcttttcgttgtagtcttcacataaattcttgaaga--atagaaatgaatctcttcagtcttaccaagagtatggcaaatgagaagcaggtatg |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33399927 |
gtggcttcttttcgttgtagtcttcacataaattcttgaagatcatagaaatgaatcttttcagtcttaccaagagtatggcaaatgagaagcaggtatg |
33400026 |
T |
|
| Q |
450 |
gtctaaaccgttgaatctcaaaaccattatttgtcatgttcgcttgatgtggcgggtattgcacgacttcattaattgagttccactcattgct |
543 |
Q |
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| T |
33400027 |
gtctaaactgttgaatctcgaaaccattatttgtaatgttcgcttgatgtggcgggtattgcacgacttcattaattgagttccactcattgct |
33400120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 32493717 - 32493567
Alignment:
| Q |
59 |
gccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccataaattctttctcat |
158 |
Q |
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| T |
32493717 |
gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccataaattctttctcat |
32493627 |
T |
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| Q |
159 |
tcttcctataatttgttgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
218 |
Q |
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| T |
32493626 |
tcttcctataatttggtgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
32493567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 345 - 516
Target Start/End: Complemental strand, 32492828 - 32492660
Alignment:
| Q |
345 |
aacaagagtggcttcttttcgttgtagtcttcacata--aattcttgaagaatagaaatgaatctcttcagtcttaccaagagtatggcaaatgagaagc |
442 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
32492828 |
aacaagagtggcttcttttcgttgcagtcttcacatataaattcttgaagaatagaaatgaatctcttcagtctaaccaggagtatggaaaatgagaagc |
32492729 |
T |
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| Q |
443 |
aggtatggtctaaaccgttgaatctcaaaaccattatttgtcatgttcgcttgatgtggcgggtattgcacgac |
516 |
Q |
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| T |
32492728 |
aggtatggtct-----gtggaatctcaaaaccattatttgtcatgtccacttgatgtggcggatattgcacgac |
32492660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 33399698 - 33399795
Alignment:
| Q |
48 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33399698 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
33399795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 32492895 - 32492827
Alignment:
| Q |
227 |
tggacacaatgctcccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
295 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32492895 |
tggacgcaatgcccccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
32492827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 20287476 - 20287513
Alignment:
| Q |
17 |
tcaataaatatgaaagtcaaacagaggtgacaagacgg |
54 |
Q |
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| T |
20287476 |
tcaataaatatgaaagtcaaacagaggtgacaagacgg |
20287513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 20286214 - 20286252
Alignment:
| Q |
14 |
acatcaataaatatgaaagtcaaacagaggtgacaagac |
52 |
Q |
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| T |
20286214 |
acatcaacaaatatggaagtcaaacagaggtgacaagac |
20286252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 6182883 - 6182925
Alignment:
| Q |
14 |
acatcaataaatatgaaagtcaaacagaggtgacaagacggtg |
56 |
Q |
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| T |
6182883 |
acatcaaaaaatattcaagtcaaacagaggtgacaagacggtg |
6182925 |
T |
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